Variant report

Variant	rs10934112
Chromosome Location	chr3:111559632-111559633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1021706	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10934114	1.00[JPT][hapmap]
rs10934116	0.86[EUR][1000 genomes]
rs1282970	1.00[JPT][hapmap]
rs1282975	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1282977	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1282978	0.88[EUR][1000 genomes]
rs1282980	0.88[EUR][1000 genomes]
rs1282981	0.88[EUR][1000 genomes]
rs1282984	0.88[EUR][1000 genomes]
rs1282992	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13063198	0.91[EUR][1000 genomes]
rs17490346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1913495	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs3925080	0.93[JPT][hapmap]
rs3925081	1.00[JPT][hapmap]
rs3925082	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4381907	0.93[JPT][hapmap]
rs4383483	0.93[JPT][hapmap]
rs4682318	0.84[EUR][1000 genomes]
rs60787620	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637689	0.93[JPT][hapmap]
rs937553	0.93[JPT][hapmap]
rs937554	1.00[JPT][hapmap]
rs9841149	1.00[JPT][hapmap]
rs9842341	1.00[JPT][hapmap]
rs9847568	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9851613	0.93[JPT][hapmap]
rs9854765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865074	0.93[JPT][hapmap];0.85[YRI][hapmap]
rs9869555	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872438	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111551400-111564800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111557400-111564800	Weak transcription	Liver	Liver
4	chr3:111558200-111563600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:111559200-111559800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:111559600-111567400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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