Variant report

Variant	rs10934114
Chromosome Location	chr3:111562805-111562806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10212121	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs10804493	0.87[EUR][1000 genomes]
rs10934112	1.00[JPT][hapmap]
rs11711475	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs12490718	1.00[CEU][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes]
rs12695246	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs1282931	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[EUR][1000 genomes]
rs1282932	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs1282970	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1282975	1.00[JPT][hapmap]
rs1282977	1.00[JPT][hapmap]
rs13063024	0.94[EUR][1000 genomes]
rs13063315	0.94[EUR][1000 genomes]
rs13083516	0.93[EUR][1000 genomes]
rs13101043	0.93[EUR][1000 genomes]
rs17490346	1.00[JPT][hapmap]
rs1913493	0.93[EUR][1000 genomes]
rs1913494	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs3925080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3925081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4381907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4383483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4583615	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626131	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7638138	0.87[EUR][1000 genomes]
rs937553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937554	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs967011	0.93[EUR][1000 genomes]
rs9814037	0.83[TSI][hapmap]
rs9827362	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9841149	1.00[JPT][hapmap]
rs9842341	1.00[JPT][hapmap]
rs9846313	0.93[EUR][1000 genomes]
rs9851613	0.93[JPT][hapmap]
rs9854765	1.00[JPT][hapmap]
rs9865074	1.00[JPT][hapmap]
rs9872438	1.00[JPT][hapmap]
rs9876709	0.83[TSI][hapmap]
rs9883806	0.96[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10934114	PVRL3	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111551400-111564800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111557400-111564800	Weak transcription	Liver	Liver
4	chr3:111558200-111563600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:111559600-111567400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:111559800-111567200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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