Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10934112	1.00[JPT][hapmap]
rs10934114	1.00[JPT][hapmap]
rs1282970	1.00[JPT][hapmap]
rs1282975	1.00[JPT][hapmap]
rs1282977	1.00[JPT][hapmap]
rs17490346	1.00[JPT][hapmap]
rs3925080	1.00[JPT][hapmap]
rs3925081	1.00[JPT][hapmap]
rs4381907	1.00[JPT][hapmap]
rs4383483	1.00[JPT][hapmap]
rs55842003	1.00[ASN][1000 genomes]
rs73226316	0.81[ASN][1000 genomes]
rs73226326	1.00[ASN][1000 genomes]
rs73226334	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637689	1.00[JPT][hapmap]
rs937553	1.00[JPT][hapmap]
rs937554	1.00[JPT][hapmap]
rs9836042	1.00[ASN][1000 genomes]
rs9842341	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9851613	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs9854765	1.00[JPT][hapmap]
rs9865074	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9872438	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111529000-111537800	Weak transcription	Liver	Liver
2	chr3:111533000-111542800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:111536200-111538400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:111536600-111539000	Weak transcription	Stomach Mucosa	stomach
5	chr3:111536600-111541800	Weak transcription	Gastric	stomach

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