Variant report

Variant	rs73226316
Chromosome Location	chr3:111529328-111529329
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55842003	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73226309	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs73226326	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73226334	0.81[ASN][1000 genomes]
rs9836042	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9841149	0.81[ASN][1000 genomes]
rs9842341	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9851613	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9865074	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9872438	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111514600-111533200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:111521200-111531000	Weak transcription	Small Intestine	intestine
3	chr3:111522400-111531400	Weak transcription	Fetal Lung	lung
4	chr3:111526000-111531400	Enhancers	Hela-S3	cervix
5	chr3:111526400-111529400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:111526400-111529400	Enhancers	Pancreas	Pancrea
7	chr3:111526400-111531000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:111526400-111531600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:111526400-111533000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr3:111526600-111531200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:111526600-111532200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:111526600-111532200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:111526600-111532200	Enhancers	NHEK	skin
14	chr3:111526600-111533000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:111526600-111533000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:111526800-111531400	Enhancers	HMEC	breast
17	chr3:111526800-111531800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:111526800-111531800	Enhancers	Osteobl	bone
19	chr3:111526800-111532000	Enhancers	NHDF-Ad	bronchial
20	chr3:111526800-111532200	Enhancers	HSMM	muscle
21	chr3:111526800-111532600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:111527000-111531200	Enhancers	NH-A	brain
23	chr3:111527000-111531600	Enhancers	HSMMtube	muscle
24	chr3:111527200-111529400	Enhancers	HepG2	liver
25	chr3:111527200-111530000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:111527800-111530000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:111527800-111532000	Enhancers	NHLF	lung
28	chr3:111528000-111531800	Enhancers	A549	lung
29	chr3:111528400-111529800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr3:111528600-111529800	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:111528600-111530400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:111528800-111531200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:111529000-111529400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:111529000-111530000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr3:111529000-111530200	Weak transcription	Fetal Intestine Small	intestine
36	chr3:111529000-111530400	Weak transcription	Fetal Kidney	kidney
37	chr3:111529000-111530600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr3:111529000-111537800	Weak transcription	Liver	Liver
39	chr3:111529200-111529400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:111529200-111531800	Weak transcription	Stomach Mucosa	stomach

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