Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10934112	0.93[JPT][hapmap]
rs10934114	0.93[JPT][hapmap]
rs1282970	0.93[JPT][hapmap]
rs1282975	0.93[JPT][hapmap]
rs1282977	0.93[JPT][hapmap]
rs17490346	0.93[JPT][hapmap]
rs3925080	0.93[JPT][hapmap]
rs3925081	0.93[JPT][hapmap]
rs4381907	0.93[JPT][hapmap]
rs4383483	0.93[JPT][hapmap]
rs55842003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226309	0.89[EUR][1000 genomes]
rs73226316	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73226326	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226334	1.00[ASN][1000 genomes]
rs7637689	0.93[JPT][hapmap]
rs937553	0.93[JPT][hapmap]
rs937554	0.93[JPT][hapmap]
rs9836042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841149	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs9842341	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854765	0.92[JPT][hapmap]
rs9865074	0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111533000-111542800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:111536600-111541800	Weak transcription	Gastric	stomach
3	chr3:111538400-111539600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:111538800-111541600	Enhancers	Fetal Heart	heart
5	chr3:111539000-111539600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:111539000-111542800	Weak transcription	Liver	Liver
7	chr3:111539400-111540200	Enhancers	Left Ventricle	heart
8	chr3:111539400-111540200	Enhancers	Right Atrium	heart

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