Variant report

Variant	rs9814037
Chromosome Location	chr3:111542871-111542872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10212121	0.81[CEU][hapmap]
rs10934110	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10934114	0.83[TSI][hapmap]
rs10934116	0.86[CHD][hapmap]
rs11711475	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs11717092	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12637888	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12695246	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs1282970	0.80[TSI][hapmap]
rs3925081	0.83[TSI][hapmap]
rs4353782	0.83[ASN][1000 genomes]
rs4373041	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4472023	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs4513422	0.91[EUR][1000 genomes]
rs4515020	0.84[ASN][1000 genomes]
rs4610200	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682063	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6438015	0.88[CEU][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6438016	0.83[ASN][1000 genomes]
rs6438018	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6772828	0.91[EUR][1000 genomes]
rs6772912	0.90[EUR][1000 genomes]
rs6772930	0.91[EUR][1000 genomes]
rs6783431	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs6794180	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6809414	0.88[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7620045	0.86[EUR][1000 genomes]
rs7634323	0.83[ASN][1000 genomes]
rs9288930	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs937554	0.85[TSI][hapmap]
rs9816926	0.83[JPT][hapmap]
rs9817633	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9817777	0.88[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs9829968	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9837252	0.83[ASN][1000 genomes]
rs9871340	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9876709	0.96[CEU][hapmap];0.83[CHB][hapmap];0.89[GIH][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes]
rs9880495	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9814037	PVRL3	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111539600-111545400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:111540200-111543200	Weak transcription	Right Atrium	heart
3	chr3:111541000-111544200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:111541000-111550600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
6	chr3:111541400-111543400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:111541800-111543600	Enhancers	Right Ventricle	heart
8	chr3:111542000-111543800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:111542000-111545600	Weak transcription	Lung	lung
10	chr3:111542400-111543600	Enhancers	Left Ventricle	heart
11	chr3:111542600-111543200	Enhancers	Colon Smooth Muscle	Colon
12	chr3:111542600-111543200	Enhancers	Fetal Intestine Large	intestine
13	chr3:111542600-111543600	Enhancers	Fetal Heart	heart
14	chr3:111542800-111543400	Enhancers	Placenta	Placenta
15	chr3:111542800-111543600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr3:111542800-111544400	Strong transcription	Liver	Liver

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