Variant report

Variant	rs4353782
Chromosome Location	chr3:111534829-111534830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11717092	0.85[ASN][1000 genomes]
rs4515020	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4610200	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4682063	0.82[ASN][1000 genomes]
rs6438016	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438018	0.85[ASN][1000 genomes]
rs6794180	0.85[ASN][1000 genomes]
rs6809414	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7634323	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288930	0.85[ASN][1000 genomes]
rs9814037	0.83[ASN][1000 genomes]
rs9829968	0.85[ASN][1000 genomes]
rs9837252	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111529000-111537800	Weak transcription	Liver	Liver
2	chr3:111531000-111535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111531600-111536000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:111533000-111542800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:111534400-111536600	Enhancers	Stomach Mucosa	stomach
6	chr3:111534600-111535000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:111534600-111535400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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