Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10934110	0.87[JPT][hapmap]
rs10934116	0.90[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap]
rs11711475	0.86[JPT][hapmap]
rs11717092	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12637888	0.86[JPT][hapmap]
rs12695246	0.86[JPT][hapmap]
rs4353782	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4472023	0.87[JPT][hapmap]
rs4515020	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4610200	0.88[ASW][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4682063	0.83[ASN][1000 genomes]
rs6438015	0.95[JPT][hapmap]
rs6438016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6438018	0.85[ASN][1000 genomes]
rs6794180	0.88[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7634323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9288930	0.88[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9814037	0.88[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9816926	0.83[JPT][hapmap]
rs9817777	0.87[JPT][hapmap]
rs9829968	0.85[ASN][1000 genomes]
rs9837252	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6809414	PVRL3	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111514600-111533200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:111526400-111533000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr3:111526600-111533000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:111526600-111533000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:111529000-111537800	Weak transcription	Liver	Liver
6	chr3:111529400-111534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:111531000-111535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:111531600-111536000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:111531800-111533000	Enhancers	Stomach Mucosa	stomach
10	chr3:111531800-111534600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:111532200-111534600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:111532600-111533000	Enhancers	Duodenum Mucosa	Duodenum
13	chr3:111532800-111533000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:111532800-111533000	Enhancers	HSMM	muscle
15	chr3:111532800-111533000	Enhancers	NHEK	skin

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