Variant report

Variant	rs9837252
Chromosome Location	chr3:111531735-111531736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11717092	0.83[ASN][1000 genomes]
rs4353782	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4515020	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4610200	0.83[ASN][1000 genomes]
rs4682063	0.82[ASN][1000 genomes]
rs6438016	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6438018	0.83[ASN][1000 genomes]
rs6794180	0.84[ASN][1000 genomes]
rs6809414	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7634323	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9288930	0.83[ASN][1000 genomes]
rs9814037	0.83[ASN][1000 genomes]
rs9829968	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111514600-111533200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:111526400-111533000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr3:111526600-111532200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:111526600-111532200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:111526600-111532200	Enhancers	NHEK	skin
6	chr3:111526600-111533000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:111526600-111533000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:111526800-111531800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:111526800-111531800	Enhancers	Osteobl	bone
10	chr3:111526800-111532000	Enhancers	NHDF-Ad	bronchial
11	chr3:111526800-111532200	Enhancers	HSMM	muscle
12	chr3:111526800-111532600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:111527800-111532000	Enhancers	NHLF	lung
14	chr3:111528000-111531800	Enhancers	A549	lung
15	chr3:111529000-111537800	Weak transcription	Liver	Liver
16	chr3:111529200-111531800	Weak transcription	Stomach Mucosa	stomach
17	chr3:111529400-111534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:111529800-111532000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr3:111530400-111532000	Enhancers	Fetal Kidney	kidney
20	chr3:111530600-111532000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr3:111531000-111535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:111531200-111532200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:111531400-111532000	Enhancers	HUVEC	blood vessel
24	chr3:111531400-111532800	Enhancers	Fetal Lung	lung
25	chr3:111531600-111531800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:111531600-111532000	Enhancers	Small Intestine	intestine
27	chr3:111531600-111532200	Weak transcription	HSMMtube	muscle
28	chr3:111531600-111532800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:111531600-111536000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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