Variant report

Variant	rs11717092
Chromosome Location	chr3:111538633-111538634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10934110	1.00[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10934116	0.82[JPT][hapmap]
rs11711475	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12637888	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12695246	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs4353782	0.85[ASN][1000 genomes]
rs4373041	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4472023	0.96[CEU][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4513422	0.91[EUR][1000 genomes]
rs4515020	0.85[ASN][1000 genomes]
rs4610200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4682063	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6438015	0.92[CEU][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6438016	0.85[ASN][1000 genomes]
rs6438018	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772828	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6772912	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6772930	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6783431	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs6794180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6809414	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7620045	0.85[EUR][1000 genomes]
rs7634323	0.85[ASN][1000 genomes]
rs9288930	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[ASN][1000 genomes]
rs9814037	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9817633	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9817777	0.92[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs9829968	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9837252	0.83[ASN][1000 genomes]
rs9871340	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9876709	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[EUR][1000 genomes]
rs9880495	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111533000-111542800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:111536600-111539000	Weak transcription	Stomach Mucosa	stomach
3	chr3:111536600-111541800	Weak transcription	Gastric	stomach
4	chr3:111537800-111539000	ZNF genes & repeats	Liver	Liver
5	chr3:111538200-111538800	Active TSS	Fetal Heart	heart
6	chr3:111538400-111539000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:111538400-111539600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:111538600-111538800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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