Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10934110	0.93[EUR][1000 genomes]
rs11717092	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12637888	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4353782	0.82[ASN][1000 genomes]
rs4373041	0.93[EUR][1000 genomes]
rs4472023	0.90[EUR][1000 genomes]
rs4513422	0.90[EUR][1000 genomes]
rs4515020	0.83[ASN][1000 genomes]
rs4610200	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6438015	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6438016	0.82[ASN][1000 genomes]
rs6438018	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6772828	0.90[EUR][1000 genomes]
rs6772912	0.89[EUR][1000 genomes]
rs6772930	0.90[EUR][1000 genomes]
rs6783431	0.84[EUR][1000 genomes]
rs6794180	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6809414	0.83[ASN][1000 genomes]
rs7620045	0.85[EUR][1000 genomes]
rs7634323	0.82[ASN][1000 genomes]
rs9288930	0.95[ASN][1000 genomes]
rs9814037	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9817633	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9817777	0.89[EUR][1000 genomes]
rs9829968	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9837252	0.82[ASN][1000 genomes]
rs9871340	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9876709	0.93[EUR][1000 genomes]
rs9880495	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111539600-111545400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:111541000-111550600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
4	chr3:111542000-111545600	Weak transcription	Lung	lung
5	chr3:111543600-111546600	Weak transcription	Adipose Nuclei	Adipose
6	chr3:111543600-111546600	Weak transcription	Fetal Heart	heart
7	chr3:111543600-111546600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:111543800-111550800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:111544200-111547400	Enhancers	Placenta	Placenta
10	chr3:111544400-111545400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:111544400-111556800	Weak transcription	Liver	Liver

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