Variant report

Variant	rs9829968
Chromosome Location	chr3:111535358-111535359
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10934110	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11717092	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637888	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4353782	0.85[ASN][1000 genomes]
rs4373041	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4472023	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4513422	0.91[EUR][1000 genomes]
rs4515020	0.85[ASN][1000 genomes]
rs4610200	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4682063	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6438015	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6438016	0.85[ASN][1000 genomes]
rs6438018	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772828	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6772912	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6772930	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6783431	0.85[EUR][1000 genomes]
rs6794180	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6809414	0.85[ASN][1000 genomes]
rs7620045	0.86[EUR][1000 genomes]
rs7634323	0.85[ASN][1000 genomes]
rs9288930	1.00[ASN][1000 genomes]
rs9814037	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9817633	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9817777	0.91[EUR][1000 genomes]
rs9837252	0.83[ASN][1000 genomes]
rs9871340	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9876709	0.97[EUR][1000 genomes]
rs9880495	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111529000-111537800	Weak transcription	Liver	Liver
2	chr3:111531000-111535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111531600-111536000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:111533000-111542800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:111534400-111536600	Enhancers	Stomach Mucosa	stomach
6	chr3:111534600-111535400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:111535000-111535800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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