Variant report

Variant	rs10217565
Chromosome Location	chr9:26150530-26150531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10116592	0.86[AMR][1000 genomes]
rs10733406	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1434877	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1434879	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1529825	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2164192	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2571525	0.89[ASN][1000 genomes]
rs2571526	0.86[ASN][1000 genomes]
rs2787165	0.86[ASN][1000 genomes]
rs4978051	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7019716	0.86[AMR][1000 genomes]
rs7020089	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7847314	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7851243	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869025	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs930284	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv892845	chr9:26121103-26179065	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv613925	chr9:26127824-26156363	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv892846	chr9:26127824-26179065	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv613926	chr9:26134368-26169347	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv892847	chr9:26134888-26210141	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26144400-26152200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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