Variant report

Variant	rs7019716
Chromosome Location	chr9:26116150-26116151
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10116592	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217565	0.86[AMR][1000 genomes]
rs10733406	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1434877	0.83[AMR][1000 genomes]
rs1434879	0.80[AMR][1000 genomes]
rs1529825	0.80[AMR][1000 genomes]
rs2164192	0.84[AMR][1000 genomes]
rs4978051	0.82[AMR][1000 genomes]
rs7020089	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7847314	0.84[AMR][1000 genomes]
rs7851243	0.82[AMR][1000 genomes]
rs930284	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26115400-26116200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:26115800-26116200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:26115800-26116400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:26116000-26116400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:26116000-26116400	Enhancers	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links