Variant report

Variant	rs10219209
Chromosome Location	chr11:15686447-15686448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11820977	1.00[AMR][1000 genomes]
rs11823154	1.00[AMR][1000 genomes]
rs11824999	1.00[AMR][1000 genomes]
rs11826065	1.00[AMR][1000 genomes]
rs11827653	1.00[AMR][1000 genomes]
rs11827876	1.00[AMR][1000 genomes]
rs1318855	1.00[AMR][1000 genomes]
rs3108757	1.00[AMR][1000 genomes]
rs326683	1.00[AMR][1000 genomes]
rs766084	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469886	chr11:15615503-15785943	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv482658	chr11:15615503-15785943	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv897011	chr11:15627855-15717671	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15681600-15686600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:15682400-15686800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:15682400-15688200	Enhancers	Fetal Intestine Small	intestine
4	chr11:15684200-15687200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:15684400-15687400	Enhancers	HUVEC	blood vessel
6	chr11:15685000-15686800	Weak transcription	NH-A	brain
7	chr11:15685400-15687800	Enhancers	Fetal Intestine Large	intestine
8	chr11:15685400-15687800	Enhancers	Placenta	Placenta
9	chr11:15685600-15686600	Weak transcription	Stomach Mucosa	stomach
10	chr11:15685800-15686800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:15685800-15686800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:15685800-15687000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:15685800-15687400	Weak transcription	Lung	lung
14	chr11:15686200-15687000	Weak transcription	A549	lung
15	chr11:15686200-15696800	Weak transcription	Pancreas	Pancrea
16	chr11:15686200-15697000	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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