Variant report

Variant	rs11823154
Chromosome Location	chr11:15679581-15679582
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10219209	1.00[AMR][1000 genomes]
rs11820977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824999	1.00[AMR][1000 genomes]
rs11826065	1.00[AMR][1000 genomes]
rs11827147	1.00[AMR][1000 genomes]
rs11827653	1.00[AMR][1000 genomes]
rs11827876	1.00[AMR][1000 genomes]
rs1318855	1.00[AMR][1000 genomes]
rs3108757	1.00[AMR][1000 genomes]
rs326683	1.00[AMR][1000 genomes]
rs766084	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469886	chr11:15615503-15785943	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv482658	chr11:15615503-15785943	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv897011	chr11:15627855-15717671	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15672400-15681000	Enhancers	Fetal Intestine Small	intestine
2	chr11:15674400-15679800	Weak transcription	Psoas Muscle	Psoas
3	chr11:15676200-15683600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:15678400-15679800	Weak transcription	Fetal Intestine Large	intestine
5	chr11:15679200-15680000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:15679200-15680200	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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