Variant report

Variant	rs766084
Chromosome Location	chr11:15822300-15822301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10219209	1.00[AMR][1000 genomes]
rs11820977	1.00[AMR][1000 genomes]
rs11823154	1.00[AMR][1000 genomes]
rs11826065	1.00[AMR][1000 genomes]
rs11827876	1.00[AMR][1000 genomes]
rs1318855	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3108757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs326682	0.98[AFR][1000 genomes]
rs326683	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1037145	chr11:15818508-15830938	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15813800-15828800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15821000-15822400	Enhancers	Adipose Nuclei	Adipose
3	chr11:15821000-15823200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:15821200-15822600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr11:15821400-15822400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:15821400-15822400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:15821400-15822600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:15821400-15822600	Enhancers	HMEC	breast
9	chr11:15821400-15822600	Enhancers	NHEK	skin
10	chr11:15821400-15823800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:15821400-15824000	Enhancers	NH-A	brain
12	chr11:15821600-15822400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:15821600-15822400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:15821600-15822400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr11:15821600-15822400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:15821600-15822600	Enhancers	Duodenum Mucosa	Duodenum
17	chr11:15821600-15822600	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr11:15821600-15822600	Enhancers	HSMM	muscle
19	chr11:15821600-15829200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:15821800-15822600	Enhancers	Primary hematopoietic stem cells	blood
21	chr11:15821800-15822600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:15821800-15822600	Flanking Active TSS	Osteobl	bone
23	chr11:15821800-15823200	Enhancers	HSMMtube	muscle
24	chr11:15822000-15827800	Weak transcription	Aorta	Aorta
25	chr11:15822200-15822400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:15822200-15822400	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr11:15822200-15822600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr11:15822200-15822600	Enhancers	NHLF	lung
29	chr11:15822200-15822800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:15822200-15823200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:15822200-15823400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links