Variant report

Variant	rs10219333
Chromosome Location	chr11:34404491-34404492
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34391759..34394626-chr11:34402095..34405297,3	MCF-7	breast:
2	chr11:34382858..34385660-chr11:34404338..34406889,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10836202	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836203	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836214	0.95[CHB][hapmap];0.80[CHD][hapmap]
rs10836232	0.90[CHB][hapmap]
rs10836233	0.95[CHB][hapmap]
rs11032618	0.82[MEX][hapmap]
rs11032624	0.82[MEX][hapmap]
rs11032642	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11032650	0.82[ASN][1000 genomes]
rs11032688	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs11032691	1.00[CHB][hapmap];0.86[YRI][hapmap]
rs11032692	1.00[CHB][hapmap];0.80[YRI][hapmap]
rs12289239	1.00[CHB][hapmap]
rs1408034	0.95[CHB][hapmap]
rs1408036	0.95[CHB][hapmap]
rs2073059	0.95[CHB][hapmap]
rs2223676	0.95[CHB][hapmap]
rs2274044	0.95[CHB][hapmap]
rs2611130	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2745919	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3758730	0.95[CHB][hapmap]
rs6484720	0.95[CHB][hapmap]
rs7111687	1.00[CHB][hapmap]
rs7111765	1.00[CHB][hapmap]
rs7111903	1.00[CHB][hapmap]
rs7118388	0.81[CHB][hapmap]
rs7127109	0.95[CHB][hapmap]
rs7127314	0.95[CHB][hapmap]
rs7127560	0.95[CHB][hapmap]
rs7128380	0.80[CHD][hapmap]
rs7928156	0.95[CHB][hapmap]
rs7928368	0.95[CHB][hapmap];0.80[CHD][hapmap]
rs7929574	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs7929931	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs7929952	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs7944397	0.95[CHB][hapmap]
rs7947841	0.95[CHB][hapmap]
rs9651597	0.81[ASN][1000 genomes]
rs9971439	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv983151	chr11:34401342-34444667	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10219333	DCDC1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34402000-34414600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34402400-34409000	Weak transcription	Liver	Liver
3	chr11:34403600-34404800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:34403600-34404800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:34403800-34404600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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