Variant report
Variant | rs7128380 |
---|---|
Chromosome Location | chr11:34419819-34419820 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000220204 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10768070 | 0.82[CHB][hapmap] |
rs10768074 | 0.85[ASN][1000 genomes] |
rs10836186 | 1.00[CEU][hapmap] |
rs10836210 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs10836212 | 0.90[ASN][1000 genomes] |
rs10836213 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10836214 | 1.00[CHD][hapmap];0.90[ASN][1000 genomes] |
rs10836219 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs10836220 | 0.94[CHB][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs10836221 | 0.89[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs10836226 | 0.85[ASN][1000 genomes] |
rs10836227 | 0.85[ASN][1000 genomes] |
rs10836228 | 0.85[ASN][1000 genomes] |
rs10836233 | 0.80[CHD][hapmap];1.00[GIH][hapmap] |
rs11032650 | 0.88[AFR][1000 genomes];0.94[ASN][1000 genomes] |
rs11032677 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs11032685 | 0.85[ASN][1000 genomes] |
rs11032686 | 0.85[ASN][1000 genomes] |
rs11032687 | 0.85[ASN][1000 genomes] |
rs11032688 | 0.85[ASN][1000 genomes] |
rs11032689 | 0.81[ASN][1000 genomes] |
rs11032690 | 0.85[ASN][1000 genomes] |
rs11032691 | 0.85[ASN][1000 genomes] |
rs11032692 | 0.85[ASN][1000 genomes] |
rs11032693 | 0.83[ASN][1000 genomes] |
rs11032694 | 0.83[ASN][1000 genomes] |
rs11605706 | 0.87[ASN][1000 genomes] |
rs12276378 | 0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12277763 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12285367 | 0.85[ASN][1000 genomes] |
rs12289239 | 1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.81[YRI][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12292102 | 0.85[ASN][1000 genomes] |
rs12708346 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12786782 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12795248 | 0.90[CHB][hapmap] |
rs12802066 | 0.85[ASN][1000 genomes] |
rs1408034 | 0.86[CHD][hapmap];1.00[GIH][hapmap] |
rs1408036 | 0.86[CHD][hapmap];1.00[GIH][hapmap] |
rs1408038 | 0.85[ASN][1000 genomes] |
rs1408039 | 0.85[ASN][1000 genomes] |
rs1408040 | 0.85[ASN][1000 genomes] |
rs34682777 | 0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs5028597 | 0.87[EUR][1000 genomes] |
rs60077297 | 0.84[ASN][1000 genomes] |
rs61447308 | 0.85[ASN][1000 genomes] |
rs6484720 | 1.00[GIH][hapmap] |
rs7111687 | 0.81[ASN][1000 genomes] |
rs7111765 | 0.83[CHD][hapmap];1.00[GIH][hapmap];0.83[ASN][1000 genomes] |
rs7111903 | 0.81[ASN][1000 genomes] |
rs7115206 | 0.81[ASN][1000 genomes] |
rs7131473 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7928368 | 1.00[CHD][hapmap];0.90[ASN][1000 genomes] |
rs7928635 | 0.90[ASN][1000 genomes] |
rs7929333 | 0.85[ASN][1000 genomes] |
rs7929460 | 0.81[ASN][1000 genomes] |
rs7929574 | 0.85[ASN][1000 genomes] |
rs7929828 | 1.00[CEU][hapmap] |
rs7929899 | 0.85[ASN][1000 genomes] |
rs7929931 | 0.85[ASN][1000 genomes] |
rs7929952 | 0.85[ASN][1000 genomes] |
rs7930070 | 0.85[ASN][1000 genomes] |
rs7944397 | 0.80[CHD][hapmap] |
rs7947841 | 0.86[CHD][hapmap];1.00[GIH][hapmap] |
rs9651597 | 0.96[AFR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv897205 | chr11:34248229-34507213 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv897207 | chr11:34253683-34621004 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
3 | nsv897208 | chr11:34257064-34562247 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
4 | nsv897209 | chr11:34309519-34548906 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
5 | nsv983151 | chr11:34401342-34444667 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:34418600-34421600 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
2 | chr11:34418800-34420200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
3 | chr11:34419000-34421000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
4 | chr11:34419000-34428600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |