Variant report

Variant	rs12708346
Chromosome Location	chr11:34422351-34422352
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34408037..34410021-chr11:34421049..34423975,2	K562	blood:
2	chr11:34422105..34424628-chr11:34424992..34426893,2	K562	blood:

Variant related genes	Relation type
ENSG00000220204	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10768074	0.85[ASN][1000 genomes]
rs10836210	0.88[ASN][1000 genomes]
rs10836212	1.00[ASN][1000 genomes]
rs10836213	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10836214	1.00[ASN][1000 genomes]
rs10836219	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10836220	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10836221	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10836226	0.85[ASN][1000 genomes]
rs10836227	0.85[ASN][1000 genomes]
rs10836228	0.85[ASN][1000 genomes]
rs10836231	0.81[ASN][1000 genomes]
rs10836232	0.82[ASN][1000 genomes]
rs10836233	0.82[ASN][1000 genomes]
rs10836235	0.82[ASN][1000 genomes]
rs11032650	0.84[ASN][1000 genomes]
rs11032677	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11032685	0.85[ASN][1000 genomes]
rs11032686	0.85[ASN][1000 genomes]
rs11032687	0.85[ASN][1000 genomes]
rs11032688	0.85[ASN][1000 genomes]
rs11032689	0.81[ASN][1000 genomes]
rs11032690	0.85[ASN][1000 genomes]
rs11032691	0.85[ASN][1000 genomes]
rs11032692	0.85[ASN][1000 genomes]
rs11032693	0.84[ASN][1000 genomes]
rs11032694	0.84[ASN][1000 genomes]
rs11032697	0.82[ASN][1000 genomes]
rs11032701	0.82[ASN][1000 genomes]
rs11605706	0.97[ASN][1000 genomes]
rs12276378	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12277763	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12285367	0.85[ASN][1000 genomes]
rs12289239	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12292102	0.85[ASN][1000 genomes]
rs12786782	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12802066	0.85[ASN][1000 genomes]
rs1408034	0.82[ASN][1000 genomes]
rs1408036	0.80[ASN][1000 genomes]
rs1408037	0.81[ASN][1000 genomes]
rs1408038	0.85[ASN][1000 genomes]
rs1408039	0.85[ASN][1000 genomes]
rs1408040	0.85[ASN][1000 genomes]
rs17884666	0.80[ASN][1000 genomes]
rs17885743	0.82[ASN][1000 genomes]
rs2073059	0.82[ASN][1000 genomes]
rs2223676	0.81[ASN][1000 genomes]
rs34682777	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3758730	0.82[ASN][1000 genomes]
rs5028597	0.87[EUR][1000 genomes]
rs60077297	0.85[ASN][1000 genomes]
rs61447308	0.85[ASN][1000 genomes]
rs6484720	0.81[ASN][1000 genomes]
rs6484721	0.81[ASN][1000 genomes]
rs7111687	0.82[ASN][1000 genomes]
rs7111765	0.84[ASN][1000 genomes]
rs7111903	0.82[ASN][1000 genomes]
rs7115206	0.82[ASN][1000 genomes]
rs7117540	0.81[ASN][1000 genomes]
rs7127109	0.81[ASN][1000 genomes]
rs7127314	0.81[ASN][1000 genomes]
rs7127560	0.81[ASN][1000 genomes]
rs7128380	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7131159	0.81[ASN][1000 genomes]
rs7131473	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7928156	0.81[ASN][1000 genomes]
rs7928368	1.00[ASN][1000 genomes]
rs7928635	1.00[ASN][1000 genomes]
rs7929333	0.85[ASN][1000 genomes]
rs7929460	0.81[ASN][1000 genomes]
rs7929574	0.85[ASN][1000 genomes]
rs7929899	0.85[ASN][1000 genomes]
rs7929931	0.85[ASN][1000 genomes]
rs7929952	0.85[ASN][1000 genomes]
rs7930070	0.85[ASN][1000 genomes]
rs7944397	0.81[ASN][1000 genomes]
rs9651597	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv983151	chr11:34401342-34444667	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34419000-34428600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34421600-34422400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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