Variant report

Variant	rs10836235
Chromosome Location	chr11:34460704-34460705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34452352..34457130-chr11:34458043..34461797,6	K562	blood:
2	chr11:34460543..34462916-chr11:34471363..34474184,2	K562	blood:
3	chr11:34460644..34463318-chr11:34487662..34489990,2	K562	blood:

Variant related genes	Relation type
ENSG00000216708	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10768074	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10836212	0.82[ASN][1000 genomes]
rs10836213	0.82[ASN][1000 genomes]
rs10836214	0.82[ASN][1000 genomes]
rs10836219	0.87[ASN][1000 genomes]
rs10836220	0.87[ASN][1000 genomes]
rs10836221	0.87[ASN][1000 genomes]
rs10836226	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10836227	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10836228	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10836231	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836232	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836233	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032677	0.89[ASN][1000 genomes]
rs11032685	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032686	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032687	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032688	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032689	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11032690	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032691	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032692	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032693	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11032694	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11032697	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032701	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032716	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032717	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11608027	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12276378	0.87[ASN][1000 genomes]
rs12277763	0.87[ASN][1000 genomes]
rs12285367	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12289239	0.87[ASN][1000 genomes]
rs12292102	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12708346	0.82[ASN][1000 genomes]
rs12786782	0.87[ASN][1000 genomes]
rs12802066	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12803540	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1408034	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1408036	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1408037	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1408038	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1408039	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1408040	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17881488	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17884666	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17885743	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2073059	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223676	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2284364	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2420387	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34682777	0.87[ASN][1000 genomes]
rs3758730	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60077297	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61447308	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6484720	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6484721	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7111687	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111765	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7111903	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7115206	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7117384	0.91[ASN][1000 genomes]
rs7117540	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7118388	0.82[ASN][1000 genomes]
rs7127109	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127314	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127560	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7131159	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7131473	0.91[ASN][1000 genomes]
rs7928156	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7928368	0.82[ASN][1000 genomes]
rs7928635	0.82[ASN][1000 genomes]
rs7929333	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7929460	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7929574	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7929899	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7929931	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7929952	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7930070	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7944397	0.99[ASN][1000 genomes]
rs7947841	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv832114	chr11:34424428-34607851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv553997	chr11:34458230-34460711	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34458800-34461200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:34458800-34463200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:34459000-34461600	Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr11:34459200-34461000	Active TSS	Muscle Satellite Cultured Cells	--
5	chr11:34459200-34461000	Active TSS	HMEC	breast
6	chr11:34459200-34461200	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr11:34459400-34461000	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr11:34459400-34461200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:34459400-34461200	Active TSS	NHDF-Ad	bronchial
10	chr11:34459400-34461600	Active TSS	K562	blood
11	chr11:34459600-34460800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:34459600-34460800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:34459600-34460800	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr11:34459600-34461000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:34459600-34461000	Active TSS	Brain Cingulate Gyrus	brain
16	chr11:34459600-34461000	Active TSS	Brain Germinal Matrix	brain
17	chr11:34459600-34461000	Active TSS	Fetal Muscle Leg	muscle
18	chr11:34459600-34461000	Active TSS	HSMMtube	muscle
19	chr11:34459600-34461000	Active TSS	NH-A	brain
20	chr11:34459600-34461200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:34459600-34461200	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr11:34459600-34461200	Active TSS	Fetal Brain Female	brain
23	chr11:34459600-34461200	Active TSS	Fetal Stomach	stomach
24	chr11:34459600-34461200	Active TSS	Fetal Thymus	thymus
25	chr11:34459600-34461200	Active TSS	Right Ventricle	heart
26	chr11:34459600-34461200	Active TSS	Stomach Smooth Muscle	stomach
27	chr11:34459600-34461200	Active TSS	Thymus	Thymus
28	chr11:34459600-34461200	Active TSS	NHLF	lung
29	chr11:34459600-34461400	Active TSS	Aorta	Aorta
30	chr11:34459600-34461400	Active TSS	Right Atrium	heart
31	chr11:34459600-34461600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:34459600-34461800	Active TSS	A549	lung
33	chr11:34459600-34462000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:34459600-34462000	Active TSS	Fetal Kidney	kidney
35	chr11:34459800-34460800	Active TSS	Primary T cells fromperipheralblood	blood
36	chr11:34459800-34460800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:34459800-34460800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:34459800-34461000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:34459800-34461000	Active TSS	Primary B cells from peripheral blood	blood
40	chr11:34459800-34461000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:34459800-34461000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:34459800-34461000	Active TSS	Brain Substantia Nigra	brain
43	chr11:34459800-34461000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr11:34459800-34461000	Active TSS	Fetal Brain Male	brain
45	chr11:34459800-34461000	Active TSS	Rectal Mucosa Donor 31	rectum
46	chr11:34459800-34461000	Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr11:34459800-34461200	Active TSS	HUES64 Cell Line	embryonic stem cell
48	chr11:34459800-34461200	Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr11:34459800-34461200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:34459800-34461200	Active TSS	Breast Myoepithelial Primary Cells	Breast

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