Variant report

Variant	rs7115206
Chromosome Location	chr11:34447940-34447941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:34447366-34447966	HL-60	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34441574..34443132-chr11:34446213..34448223,2	K562	blood:
2	chr11:34447027..34448601-chr11:34452775..34454471,2	MCF-7	breast:
3	chr11:34444429..34446350-chr11:34447705..34449536,2	K562	blood:
4	chr11:34443552..34446459-chr11:34446644..34449623,2	MCF-7	breast:
5	chr11:34447883..34451792-chr11:34456049..34462661,10	K562	blood:

No data

Variant related genes	Relation type
CIR1P3	TF binding region
ENSG00000121691	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10768074	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836210	0.80[ASN][1000 genomes]
rs10836212	0.82[ASN][1000 genomes]
rs10836213	0.84[ASN][1000 genomes]
rs10836214	0.82[ASN][1000 genomes]
rs10836219	0.90[ASN][1000 genomes]
rs10836220	0.90[ASN][1000 genomes]
rs10836221	0.90[ASN][1000 genomes]
rs10836226	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836227	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836228	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836231	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10836232	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10836233	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10836235	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032677	0.91[ASN][1000 genomes]
rs11032685	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032686	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032687	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032688	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032689	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11032690	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032691	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032692	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032693	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032694	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032697	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032701	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032716	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11032717	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11608027	0.84[EUR][1000 genomes]
rs12276378	0.90[ASN][1000 genomes]
rs12277763	0.90[ASN][1000 genomes]
rs12285367	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12289239	0.90[ASN][1000 genomes]
rs12292102	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12708346	0.82[ASN][1000 genomes]
rs12786782	0.90[ASN][1000 genomes]
rs12802066	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12803540	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1408034	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1408036	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1408037	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1408038	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1408039	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1408040	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17881488	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17884666	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17885743	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2073059	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2223676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2284364	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2420387	0.84[EUR][1000 genomes]
rs34682777	0.90[ASN][1000 genomes]
rs3758730	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60077297	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61447308	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484720	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484721	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111687	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111765	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7111903	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117384	0.89[ASN][1000 genomes]
rs7117540	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7127109	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7127314	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7127560	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7128380	0.81[ASN][1000 genomes]
rs7131159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7131473	0.93[ASN][1000 genomes]
rs7928156	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7928368	0.82[ASN][1000 genomes]
rs7928635	0.82[ASN][1000 genomes]
rs7929333	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7929460	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7929574	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7929899	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7929931	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7929952	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7930070	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7944397	0.98[ASN][1000 genomes]
rs7947841	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv832114	chr11:34424428-34607851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34438200-34448600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr11:34443400-34450000	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:34443800-34460000	Weak transcription	Esophagus	oesophagus
4	chr11:34445000-34449400	Enhancers	HMEC	breast
5	chr11:34445400-34448200	Weak transcription	Fetal Lung	lung
6	chr11:34445400-34448600	Weak transcription	Lung	lung
7	chr11:34445600-34448200	Weak transcription	Placenta	Placenta
8	chr11:34446600-34448400	Enhancers	HSMM	muscle
9	chr11:34446600-34448600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:34446600-34455000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:34446800-34448400	Enhancers	Osteobl	bone
12	chr11:34447000-34448200	Enhancers	NHDF-Ad	bronchial
13	chr11:34447000-34448400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:34447000-34448800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:34447000-34449000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:34447000-34449400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:34447200-34449600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:34447400-34448600	Enhancers	Hela-S3	cervix
19	chr11:34447400-34448800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:34447400-34449400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr11:34447400-34449400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr11:34447400-34449600	Enhancers	HSMMtube	muscle
23	chr11:34447400-34449600	Enhancers	NHEK	skin
24	chr11:34447400-34449800	Enhancers	NHLF	lung
25	chr11:34447400-34451200	Enhancers	Adipose Nuclei	Adipose
26	chr11:34447600-34448000	Weak transcription	A549	lung
27	chr11:34447600-34448400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr11:34447600-34448800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:34447600-34448800	Enhancers	K562	blood
30	chr11:34447600-34449200	Enhancers	NH-A	brain
31	chr11:34447600-34450200	Enhancers	HepG2	liver
32	chr11:34447800-34448200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:34447800-34448400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:34447800-34448400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:34447800-34448600	Enhancers	Primary B cells from cord blood	blood
36	chr11:34447800-34450000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:34447800-34450000	Enhancers	Liver	Liver
38	chr11:34447800-34450600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links