Variant report

Variant	rs11032642
Chromosome Location	chr11:34405546-34405547
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34382858..34385660-chr11:34404338..34406889,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10219333	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10742314	0.92[EUR][1000 genomes]
rs10768059	1.00[CEU][hapmap]
rs10768060	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10768061	0.81[EUR][1000 genomes]
rs10768062	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10768063	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10768064	0.81[EUR][1000 genomes]
rs10768065	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10768066	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10768067	0.81[EUR][1000 genomes]
rs10768068	0.81[EUR][1000 genomes]
rs10768069	0.92[EUR][1000 genomes]
rs10836190	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10836191	0.81[EUR][1000 genomes]
rs10836195	0.81[EUR][1000 genomes]
rs10836196	0.92[EUR][1000 genomes]
rs10836197	0.92[EUR][1000 genomes]
rs10836202	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10836203	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10836214	0.95[CHB][hapmap]
rs10836232	0.90[CHB][hapmap]
rs10836233	0.95[CHB][hapmap]
rs11032621	1.00[CEU][hapmap]
rs11032624	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11032625	0.81[EUR][1000 genomes]
rs11032627	0.92[EUR][1000 genomes]
rs11032628	0.92[EUR][1000 genomes]
rs11032631	0.92[EUR][1000 genomes]
rs11032632	0.92[EUR][1000 genomes]
rs11032634	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11032635	0.92[EUR][1000 genomes]
rs11032650	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11032688	1.00[CHB][hapmap]
rs11032691	1.00[CHB][hapmap]
rs11032692	1.00[CHB][hapmap]
rs12289239	1.00[CHB][hapmap]
rs12296013	0.92[EUR][1000 genomes]
rs1408034	0.95[CHB][hapmap]
rs1408036	0.95[CHB][hapmap]
rs1810506	0.81[EUR][1000 genomes]
rs1810507	0.81[EUR][1000 genomes]
rs1883736	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1925368	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1925371	0.92[EUR][1000 genomes]
rs1925372	0.92[EUR][1000 genomes]
rs1925374	0.92[EUR][1000 genomes]
rs2001176	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2073059	0.95[CHB][hapmap]
rs2092485	0.81[EUR][1000 genomes]
rs2223676	0.95[CHB][hapmap]
rs2274044	0.95[CHB][hapmap]
rs2745919	0.83[AFR][1000 genomes]
rs3740795	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs3740796	0.92[EUR][1000 genomes]
rs3758730	0.95[CHB][hapmap]
rs3817990	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3981191	0.81[EUR][1000 genomes]
rs3981192	0.81[EUR][1000 genomes]
rs4140544	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4993520	0.81[EUR][1000 genomes]
rs6484710	0.92[EUR][1000 genomes]
rs6484711	0.92[EUR][1000 genomes]
rs6484720	0.95[CHB][hapmap]
rs7110380	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7111687	1.00[CHB][hapmap]
rs7111765	1.00[CHB][hapmap]
rs7111903	1.00[CHB][hapmap]
rs7118388	0.81[CHB][hapmap]
rs7124239	0.92[EUR][1000 genomes]
rs7127109	0.95[CHB][hapmap]
rs7127314	0.95[CHB][hapmap]
rs7127560	0.95[CHB][hapmap]
rs742634	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7927718	0.84[EUR][1000 genomes]
rs7928156	0.95[CHB][hapmap]
rs7928368	0.95[CHB][hapmap]
rs7929574	1.00[CHB][hapmap]
rs7929931	1.00[CHB][hapmap]
rs7929952	1.00[CHB][hapmap]
rs7944397	0.95[CHB][hapmap]
rs7947841	0.95[CHB][hapmap]
rs910088	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9651597	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9971439	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv983151	chr11:34401342-34444667	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34402000-34414600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34402400-34409000	Weak transcription	Liver	Liver

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