Variant report

Variant	rs7124239
Chromosome Location	chr11:34385143-34385144
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34385036..34386808-chr11:34464800..34467600,2	K562	blood:
2	chr11:34382858..34385660-chr11:34404338..34406889,2	MCF-7	breast:
3	chr11:34384171..34386808-chr11:34464497..34467600,3	K562	blood:
4	chr11:34197536..34200208-chr11:34383082..34386079,2	K562	blood:
5	chr11:34378575..34381339-chr11:34384070..34386335,2	K562	blood:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10742313	0.80[EUR][1000 genomes]
rs10742314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10768059	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10768060	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768061	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768062	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768063	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768064	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768065	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768066	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768067	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768068	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836190	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10836191	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10836194	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10836195	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10836196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032621	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11032624	0.88[EUR][1000 genomes]
rs11032625	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11032627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032634	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032635	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032642	0.92[EUR][1000 genomes]
rs11032650	0.83[EUR][1000 genomes]
rs12296013	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12787642	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1810506	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1810507	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1883736	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1925368	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925371	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1925372	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1925374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1977109	0.80[EUR][1000 genomes]
rs2001176	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2092485	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3740795	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740796	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3817990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3981191	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3981192	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4140544	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4993520	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6484710	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6484711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7110380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742634	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7927418	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7927718	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs910088	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9651597	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34380800-34385600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:34381000-34385600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:34381000-34392800	Weak transcription	Right Atrium	heart
4	chr11:34381200-34385400	Weak transcription	Thymus	Thymus
5	chr11:34381200-34385600	Weak transcription	Primary T cells from cord blood	blood
6	chr11:34381200-34385600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:34381200-34385600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:34381400-34385200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:34381600-34385600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:34384200-34386600	Enhancers	Liver	Liver
11	chr11:34384200-34386800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:34384800-34385400	Enhancers	Stomach Mucosa	stomach
13	chr11:34384800-34386200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:34385000-34385400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:34385000-34386200	Flanking Active TSS	HepG2	liver
16	chr11:34385000-34386600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr11:34385000-34386600	Enhancers	Fetal Thymus	thymus

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