Variant report

Variant	rs742634
Chromosome Location	chr11:34376317-34376318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34352862..34355628-chr11:34375081..34377214,3	MCF-7	breast:
2	chr11:34195960..34197951-chr11:34375178..34377158,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10742313	0.80[EUR][1000 genomes]
rs10742314	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10768059	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10768060	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768061	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768062	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768063	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768064	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768065	1.00[CEU][hapmap];0.91[MEX][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768066	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768067	0.88[EUR][1000 genomes]
rs10768068	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768069	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836190	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10836191	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10836194	0.80[EUR][1000 genomes]
rs10836195	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10836196	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836197	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032618	0.82[MEX][hapmap]
rs11032621	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11032624	1.00[CEU][hapmap];0.82[MEX][hapmap];0.88[EUR][1000 genomes]
rs11032625	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11032627	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032628	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032631	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032632	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032634	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032635	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032642	0.92[EUR][1000 genomes]
rs11032650	0.83[EUR][1000 genomes]
rs12296013	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12787642	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1810506	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1810507	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1883736	1.00[CEU][hapmap];0.91[MEX][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1925368	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1925371	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1925372	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1925374	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1977109	0.80[EUR][1000 genomes]
rs2001176	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2092485	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3740795	0.92[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3740796	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3817990	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3981191	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3981192	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4140544	1.00[CEU][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4993520	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6484710	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6484711	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7110380	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7124239	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7927418	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7927718	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs910088	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9651597	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv897210	chr11:34349427-34381075	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34364200-34376600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34367400-34376400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:34367800-34376400	Weak transcription	Pancreas	Pancrea
4	chr11:34368200-34376600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:34368400-34377800	Weak transcription	Gastric	stomach
6	chr11:34368600-34376400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:34370800-34376400	Weak transcription	Lung	lung
8	chr11:34371000-34376400	Weak transcription	Fetal Heart	heart
9	chr11:34371000-34376400	Weak transcription	Fetal Thymus	thymus
10	chr11:34371400-34376400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:34371400-34376800	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:34372000-34377200	Weak transcription	Aorta	Aorta
13	chr11:34372800-34376400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:34374600-34376400	Weak transcription	Psoas Muscle	Psoas
15	chr11:34374800-34376600	Enhancers	Liver	Liver
16	chr11:34375000-34376400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:34375000-34376400	Active TSS	GM12878-XiMat	blood
18	chr11:34375200-34376400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:34375200-34377000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr11:34375400-34377400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr11:34375600-34377000	Enhancers	Brain Substantia Nigra	brain
22	chr11:34375600-34378000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:34375800-34376400	Enhancers	Left Ventricle	heart
24	chr11:34375800-34376600	Weak transcription	Fetal Brain Female	brain
25	chr11:34375800-34376600	Enhancers	Right Atrium	heart
26	chr11:34375800-34378000	Flanking Active TSS	Brain Germinal Matrix	brain
27	chr11:34376000-34376400	Enhancers	HepG2	liver
28	chr11:34376000-34377200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:34376200-34376400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:34376200-34376400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:34376200-34376400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:34376200-34376400	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr11:34376200-34376600	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr11:34376200-34376600	Bivalent Enhancer	Fetal Lung	lung
35	chr11:34376200-34376600	Enhancers	HSMM	muscle
36	chr11:34376200-34376800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr11:34376200-34376800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:34376200-34376800	Bivalent Enhancer	Fetal Muscle Leg	muscle
39	chr11:34376200-34376800	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr11:34376200-34377000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:34376200-34377000	Enhancers	Fetal Brain Male	brain
42	chr11:34376200-34377000	Enhancers	Right Ventricle	heart
43	chr11:34376200-34377000	Flanking Active TSS	HSMMtube	muscle
44	chr11:34376200-34377200	Enhancers	Brain Anterior Caudate	brain
45	chr11:34376200-34377200	Enhancers	Hela-S3	cervix
46	chr11:34376200-34377200	Enhancers	NH-A	brain
47	chr11:34376200-34377400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:34376200-34377400	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr11:34376200-34377600	Enhancers	Placenta	Placenta
50	chr11:34376200-34377600	Enhancers	HMEC	breast

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