Variant report

Variant	rs1925368
Chromosome Location	chr11:34378381-34378382
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34073205..34075094-chr11:34377742..34380453,3	MCF-7	breast:
2	chr11:34071981..34076766-chr11:34377622..34383038,7	MCF-7	breast:
3	chr11:34126304..34129768-chr11:34376546..34381116,4	MCF-7	breast:
4	chr11:34125543..34130810-chr11:34377372..34382966,13	MCF-7	breast:
5	chr11:34378273..34378978-chr5:138941341..138941940,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction
ENSG00000131508	Chromatin interaction
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10742313	0.80[EUR][1000 genomes]
rs10742314	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10768059	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10768060	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768061	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768062	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768063	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768064	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768065	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768066	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768067	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768068	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768069	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836190	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10836191	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10836194	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10836195	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10836196	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836197	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032621	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11032624	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11032625	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11032627	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032628	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032631	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032632	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032642	0.92[EUR][1000 genomes]
rs11032650	0.83[EUR][1000 genomes]
rs12296013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12787642	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1810506	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1810507	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1883736	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1925371	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1925372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1925374	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1977109	0.80[EUR][1000 genomes]
rs2001176	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2092485	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3740795	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3817990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3981191	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3981192	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4140544	1.00[CEU][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4993520	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6484710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6484711	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7110380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124239	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742634	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7927418	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7927718	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs910088	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9651597	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv897210	chr11:34349427-34381075	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34376200-34378600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:34376400-34381200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:34376600-34378800	Flanking Active TSS	Liver	Liver
4	chr11:34376800-34379400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr11:34376800-34379400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr11:34376800-34379400	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr11:34377000-34378400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
8	chr11:34377000-34379000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:34377000-34380200	Active TSS	HSMMtube	muscle
10	chr11:34377200-34378400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:34377200-34378400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr11:34377200-34378400	Flanking Active TSS	NH-A	brain
13	chr11:34377200-34378600	Flanking Active TSS	NHEK	skin
14	chr11:34377200-34378800	Flanking Active TSS	Brain Anterior Caudate	brain
15	chr11:34377200-34378800	Flanking Active TSS	Hela-S3	cervix
16	chr11:34377200-34379000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr11:34377200-34379000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:34377200-34379000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:34377400-34378600	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr11:34377400-34378600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
21	chr11:34377400-34378600	Flanking Active TSS	Psoas Muscle	Psoas
22	chr11:34377400-34378600	Flanking Bivalent TSS/Enh	Thymus	Thymus
23	chr11:34377400-34379000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:34377400-34379000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
25	chr11:34377400-34379200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr11:34377400-34380200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:34377400-34380400	Active TSS	NHLF	lung
28	chr11:34377400-34381000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
29	chr11:34377400-34381000	Active TSS	Left Ventricle	heart
30	chr11:34377600-34378400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr11:34377600-34378400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
32	chr11:34377600-34378400	Flanking Active TSS	Fetal Heart	heart
33	chr11:34377600-34378400	Enhancers	Placenta Amnion	Placenta Amnion
34	chr11:34377600-34378600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
35	chr11:34377600-34378600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
36	chr11:34377600-34378600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
37	chr11:34377600-34378600	Flanking Active TSS	Brain Angular Gyrus	brain
38	chr11:34377600-34378600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
39	chr11:34377600-34378600	Flanking Bivalent TSS/Enh	Placenta	Placenta
40	chr11:34377600-34378600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
41	chr11:34377600-34378800	Bivalent/Poised TSS	Fetal Brain Female	brain
42	chr11:34377600-34378800	Flanking Active TSS	Right Ventricle	heart
43	chr11:34377600-34379000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:34377600-34379000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
45	chr11:34377600-34379200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
46	chr11:34377600-34379400	Flanking Active TSS	Pancreas	Pancrea
47	chr11:34377600-34379400	Flanking Active TSS	HMEC	breast
48	chr11:34377600-34380000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:34377600-34380200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
50	chr11:34377600-34381000	Active TSS	Aorta	Aorta

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