Variant report

Variant	rs10219376
Chromosome Location	chr11:10701586-10701587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10699670..10701867-chr11:10703402..10705803,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10770130	0.80[EUR][1000 genomes]
rs10840460	0.82[EUR][1000 genomes]
rs10840461	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10840462	0.82[EUR][1000 genomes]
rs10840463	0.82[EUR][1000 genomes]
rs10840464	0.82[EUR][1000 genomes]
rs10840465	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10840466	0.83[EUR][1000 genomes]
rs10840467	0.83[EUR][1000 genomes]
rs11042913	0.82[EUR][1000 genomes]
rs1390572	0.82[EUR][1000 genomes]
rs1425149	0.82[EUR][1000 genomes]
rs1425150	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1425151	0.82[EUR][1000 genomes]
rs1544862	0.82[EUR][1000 genomes]
rs1845832	0.82[EUR][1000 genomes]
rs1874444	0.83[EUR][1000 genomes]
rs1895712	0.82[EUR][1000 genomes]
rs35040034	0.81[EUR][1000 genomes]
rs722274	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7933525	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv7676	chr11:10689144-10734139	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10696800-10702600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10697000-10713200	Weak transcription	Gastric	stomach
3	chr11:10697200-10713800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:10697200-10714000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:10697400-10704200	Weak transcription	Ovary	ovary
6	chr11:10697400-10708400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:10697600-10712000	Weak transcription	Brain Anterior Caudate	brain
8	chr11:10697600-10712000	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:10697800-10709800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:10698400-10707200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:10698600-10713800	Weak transcription	Lung	lung
12	chr11:10698800-10705000	Weak transcription	Left Ventricle	heart
13	chr11:10698800-10707400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:10698800-10710400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:10698800-10713800	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:10699400-10705000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:10699600-10702600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:10699800-10705600	Strong transcription	Fetal Stomach	stomach
19	chr11:10699800-10711200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:10700200-10701600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr11:10700800-10713400	Weak transcription	Fetal Intestine Small	intestine
22	chr11:10701200-10702200	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:10701200-10702600	Weak transcription	NHLF	lung
24	chr11:10701200-10703000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:10701200-10703000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:10701200-10705200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:10701400-10702400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:10701400-10702400	Weak transcription	Aorta	Aorta
29	chr11:10701400-10702600	Weak transcription	Stomach Smooth Muscle	stomach

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