Variant report

Variant	rs7933525
Chromosome Location	chr11:10692127-10692128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10690159..10692528-chr11:10735582..10739094,3	MCF-7	breast:
2	chr11:10691286..10695244-chr11:10695981..10700197,4	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10219376	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10431031	0.86[EUR][1000 genomes]
rs10770128	0.95[CEU][hapmap];0.85[GIH][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs10770129	0.95[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10770130	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10770132	0.81[CHD][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs10770133	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10840451	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs10840454	0.93[EUR][1000 genomes]
rs10840455	0.90[CEU][hapmap];0.83[GIH][hapmap];0.86[TSI][hapmap];0.93[EUR][1000 genomes]
rs10840456	0.95[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10840458	0.87[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs10840459	0.89[ASN][1000 genomes]
rs10840460	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840461	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840462	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840463	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840464	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840465	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840466	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840467	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840468	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs11042909	0.93[EUR][1000 genomes]
rs11042911	0.81[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs11042913	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363422	0.85[ASN][1000 genomes]
rs12420672	0.85[ASN][1000 genomes]
rs12420675	0.85[ASN][1000 genomes]
rs1390572	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390573	0.87[ASN][1000 genomes]
rs1425149	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425150	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425151	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544862	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544863	0.87[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs16908157	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs16908159	0.81[CHD][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs16908162	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1845832	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874444	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1895712	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2098840	0.95[ASN][1000 genomes]
rs34554801	0.89[ASN][1000 genomes]
rs35040034	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35165550	0.85[ASN][1000 genomes]
rs4243916	0.87[ASN][1000 genomes]
rs4909946	0.87[ASN][1000 genomes]
rs4910166	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs7123106	0.80[EUR][1000 genomes]
rs7127014	0.82[EUR][1000 genomes]
rs722274	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745336	0.87[ASN][1000 genomes]
rs750540	0.85[ASN][1000 genomes]
rs7925193	0.84[JPT][hapmap]
rs7935285	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs7938027	0.87[ASN][1000 genomes]
rs7938635	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs7939662	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7939686	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs881870	0.81[CHD][hapmap];0.80[ASN][1000 genomes]
rs903825	0.85[ASN][1000 genomes]
rs903826	0.85[ASN][1000 genomes]
rs903827	0.85[ASN][1000 genomes]
rs903828	0.85[ASN][1000 genomes]
rs9633862	0.86[EUR][1000 genomes]
rs9633863	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv2753762	chr11:10688217-10701438	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv7676	chr11:10689144-10734139	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10680600-10696200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:10683800-10692400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:10686000-10692200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:10688000-10692200	Enhancers	HSMMtube	muscle
5	chr11:10688200-10692200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:10688200-10692200	Enhancers	HSMM	muscle
7	chr11:10688400-10692200	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr11:10688600-10695600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:10689000-10692400	Enhancers	Fetal Stomach	stomach
10	chr11:10689400-10695200	Weak transcription	Brain Substantia Nigra	brain
11	chr11:10690200-10692200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:10690400-10692200	Enhancers	Duodenum Mucosa	Duodenum
13	chr11:10690800-10692200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:10691000-10695400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:10691000-10695600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:10691000-10696000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:10691000-10696200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:10691000-10697200	Weak transcription	Stomach Mucosa	stomach
19	chr11:10691200-10692200	Enhancers	Aorta	Aorta
20	chr11:10691200-10692200	Enhancers	Brain Cingulate Gyrus	brain
21	chr11:10691200-10695400	Weak transcription	Spleen	Spleen
22	chr11:10691400-10692400	Enhancers	NHLF	lung
23	chr11:10691400-10695400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:10691400-10695600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:10691400-10695600	Weak transcription	Left Ventricle	heart
26	chr11:10691600-10692400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:10691600-10692400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:10691600-10692400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr11:10691600-10692600	Enhancers	Colon Smooth Muscle	Colon
30	chr11:10691600-10695200	Weak transcription	Brain Angular Gyrus	brain
31	chr11:10691600-10695600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:10691600-10695600	Weak transcription	Lung	lung
33	chr11:10691600-10695800	Weak transcription	Placenta	Placenta
34	chr11:10691600-10696200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:10691800-10692400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr11:10691800-10692400	Enhancers	NHDF-Ad	bronchial
37	chr11:10691800-10693000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:10691800-10695000	Weak transcription	A549	lung
39	chr11:10691800-10695200	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:10691800-10695400	Weak transcription	Osteobl	bone
41	chr11:10691800-10695600	Weak transcription	Brain Anterior Caudate	brain
42	chr11:10691800-10695600	Weak transcription	Colonic Mucosa	Colon
43	chr11:10691800-10696200	Weak transcription	Right Ventricle	heart
44	chr11:10692000-10692400	Enhancers	Stomach Smooth Muscle	stomach
45	chr11:10692000-10692600	Enhancers	Rectal Smooth Muscle	rectum
46	chr11:10692000-10694400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:10692000-10694600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:10692000-10694600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:10692000-10695200	Weak transcription	Adipose Nuclei	Adipose
50	chr11:10692000-10695400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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