Variant report

Variant	rs4910166
Chromosome Location	chr11:10696643-10696644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10688135..10690797-chr11:10695097..10696777,2	K562	blood:
2	chr11:10694517..10697367-chr11:10731815..10734225,2	K562	blood:
3	chr11:10589192..10591636-chr11:10696263..10698924,2	K562	blood:
4	chr11:10691286..10695244-chr11:10695981..10700197,4	MCF-7	breast:
5	chr11:10690084..10691721-chr11:10696494..10698749,2	K562	blood:

Variant related genes	Relation type
ENSG00000133800	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10770129	0.82[JPT][hapmap]
rs10770130	0.87[ASN][1000 genomes]
rs10770132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10770133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840456	0.82[JPT][hapmap]
rs10840458	0.85[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs10840459	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840460	0.85[ASN][1000 genomes]
rs10840461	0.85[ASN][1000 genomes]
rs10840462	0.85[ASN][1000 genomes]
rs10840463	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs10840464	0.85[ASN][1000 genomes]
rs10840465	0.85[ASN][1000 genomes]
rs10840466	0.85[ASN][1000 genomes]
rs10840467	0.84[ASN][1000 genomes]
rs10840468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042910	0.81[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes]
rs11042911	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11042913	0.85[ASN][1000 genomes]
rs11512010	0.87[EUR][1000 genomes]
rs12363422	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420672	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420675	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390572	0.85[ASN][1000 genomes]
rs1390573	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1425149	0.85[ASN][1000 genomes]
rs1425150	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1425151	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1544862	0.85[ASN][1000 genomes]
rs1544863	0.85[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs16908157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16908159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16908162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1845832	0.85[ASN][1000 genomes]
rs1874444	0.85[ASN][1000 genomes]
rs1895712	0.85[ASN][1000 genomes]
rs2098840	0.86[ASN][1000 genomes]
rs34554801	0.95[ASN][1000 genomes]
rs35040034	0.85[ASN][1000 genomes]
rs35165550	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243916	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4909946	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4910164	0.88[EUR][1000 genomes]
rs722274	0.85[ASN][1000 genomes]
rs745336	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs750540	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925193	1.00[CEU][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7933525	0.85[ASN][1000 genomes]
rs7938027	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7939662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs881870	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs903825	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs903826	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs903827	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs903828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv2753762	chr11:10688217-10701438	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv7676	chr11:10689144-10734139	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10691000-10697200	Weak transcription	Stomach Mucosa	stomach
2	chr11:10692200-10696800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:10692200-10697000	Weak transcription	Aorta	Aorta
4	chr11:10694400-10697600	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:10694400-10698000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:10694600-10697200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:10694600-10698400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:10694600-10698800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:10695000-10698000	Enhancers	NHLF	lung
10	chr11:10695200-10697400	Enhancers	Brain Angular Gyrus	brain
11	chr11:10695200-10697400	Enhancers	Brain Substantia Nigra	brain
12	chr11:10695400-10696800	Flanking Active TSS	Colon Smooth Muscle	Colon
13	chr11:10695400-10696800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr11:10695400-10697200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:10695400-10697400	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr11:10695400-10699000	Enhancers	Spleen	Spleen
17	chr11:10695600-10696800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:10695600-10697000	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr11:10695600-10697000	Enhancers	Gastric	stomach
20	chr11:10695600-10697000	Flanking Active TSS	Rectal Smooth Muscle	rectum
21	chr11:10695600-10697200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:10695600-10697200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:10695600-10697200	Enhancers	Liver	Liver
24	chr11:10695600-10697200	Enhancers	Fetal Muscle Leg	muscle
25	chr11:10695600-10697400	Genic enhancers	Fetal Stomach	stomach
26	chr11:10695600-10697400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr11:10695600-10697600	Enhancers	Brain Anterior Caudate	brain
28	chr11:10695600-10697600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr11:10695600-10697600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr11:10695600-10698600	Enhancers	Lung	lung
31	chr11:10695600-10698800	Enhancers	Left Ventricle	heart
32	chr11:10695800-10697200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:10695800-10697200	Enhancers	Primary B cells from cord blood	blood
34	chr11:10695800-10697200	Enhancers	Placenta	Placenta
35	chr11:10695800-10697200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr11:10695800-10697400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr11:10695800-10697600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
38	chr11:10695800-10697600	Enhancers	Right Atrium	heart
39	chr11:10696000-10696800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:10696000-10696800	Weak transcription	Fetal Lung	lung
41	chr11:10696000-10697000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:10696000-10697000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:10696000-10697000	Flanking Active TSS	Osteobl	bone
44	chr11:10696000-10697200	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr11:10696000-10697200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:10696000-10697200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:10696000-10697200	Enhancers	Fetal Intestine Small	intestine
48	chr11:10696000-10697200	Enhancers	Fetal Muscle Trunk	muscle
49	chr11:10696000-10697200	Enhancers	K562	blood
50	chr11:10696000-10697400	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood

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