Variant report

Variant	rs745336
Chromosome Location	chr11:10690649-10690650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10689241..10690956-chr11:10698574..10700529,2	K562	blood:
2	chr11:10688135..10690797-chr11:10695097..10696777,2	K562	blood:
3	chr11:10689604..10691853-chr11:10718013..10720548,2	K562	blood:
4	chr11:10690159..10692528-chr11:10735582..10739094,3	MCF-7	breast:
5	chr11:10687959..10690834-chr11:10758767..10760971,2	K562	blood:
6	chr11:10686058..10688524-chr11:10689302..10691752,2	MCF-7	breast:
7	chr11:10690084..10691721-chr11:10696494..10698749,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10770129	0.84[JPT][hapmap]
rs10770130	0.89[ASN][1000 genomes]
rs10770132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10770133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10840456	0.84[JPT][hapmap]
rs10840458	0.86[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs10840459	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840460	0.87[ASN][1000 genomes]
rs10840461	0.87[ASN][1000 genomes]
rs10840462	0.87[ASN][1000 genomes]
rs10840463	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10840464	0.87[ASN][1000 genomes]
rs10840465	0.87[ASN][1000 genomes]
rs10840466	0.87[ASN][1000 genomes]
rs10840467	0.87[ASN][1000 genomes]
rs10840468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042910	0.82[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11042911	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042913	0.87[ASN][1000 genomes]
rs11512010	0.87[EUR][1000 genomes]
rs12363422	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12420672	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12420675	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1390572	0.87[ASN][1000 genomes]
rs1390573	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425149	0.87[ASN][1000 genomes]
rs1425150	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1425151	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1544862	0.87[ASN][1000 genomes]
rs1544863	0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs16908157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16908159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16908162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1845832	0.87[ASN][1000 genomes]
rs1874444	0.87[ASN][1000 genomes]
rs1895712	0.87[ASN][1000 genomes]
rs2098840	0.88[ASN][1000 genomes]
rs34554801	0.98[ASN][1000 genomes]
rs35040034	0.87[ASN][1000 genomes]
rs35165550	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4243916	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4909946	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910164	0.88[EUR][1000 genomes]
rs4910166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs722274	0.87[ASN][1000 genomes]
rs750540	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925193	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7933525	0.87[ASN][1000 genomes]
rs7938027	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7939686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs881870	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs903825	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs903826	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs903827	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs903828	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv2753762	chr11:10688217-10701438	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv7676	chr11:10689144-10734139	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10680600-10696200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:10683800-10692400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:10684400-10692000	Enhancers	Ovary	ovary
4	chr11:10685000-10690800	Enhancers	NHDF-Ad	bronchial
5	chr11:10686000-10692200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:10686800-10691400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:10687200-10692000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:10687400-10691000	Enhancers	NHLF	lung
9	chr11:10687400-10691400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr11:10687600-10690800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:10687600-10691800	Enhancers	Osteobl	bone
12	chr11:10687800-10690800	Enhancers	Hela-S3	cervix
13	chr11:10688000-10691000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr11:10688000-10692200	Enhancers	HSMMtube	muscle
15	chr11:10688200-10691600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:10688200-10691800	Enhancers	Brain Hippocampus Middle	brain
17	chr11:10688200-10692000	Enhancers	Adipose Nuclei	Adipose
18	chr11:10688200-10692200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:10688200-10692200	Enhancers	HSMM	muscle
20	chr11:10688400-10692200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr11:10688600-10690800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:10688600-10690800	Weak transcription	HepG2	liver
23	chr11:10688600-10695600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:10689000-10691000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr11:10689000-10692400	Enhancers	Fetal Stomach	stomach
26	chr11:10689200-10690800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:10689200-10691000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:10689200-10691000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:10689400-10690800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:10689400-10690800	Weak transcription	NH-A	brain
31	chr11:10689400-10695200	Weak transcription	Brain Substantia Nigra	brain
32	chr11:10689600-10690800	Weak transcription	Left Ventricle	heart
33	chr11:10689600-10690800	Weak transcription	Psoas Muscle	Psoas
34	chr11:10689600-10690800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr11:10689800-10690800	Weak transcription	K562	blood
36	chr11:10689800-10691000	Weak transcription	Aorta	Aorta
37	chr11:10689800-10691200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:10690000-10692000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr11:10690000-10692000	Enhancers	Fetal Kidney	kidney
40	chr11:10690200-10691000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:10690200-10691200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:10690200-10691600	Enhancers	Brain Angular Gyrus	brain
43	chr11:10690200-10691800	Enhancers	Muscle Satellite Cultured Cells	--
44	chr11:10690200-10691800	Enhancers	Colonic Mucosa	Colon
45	chr11:10690200-10692000	Enhancers	Fetal Intestine Large	intestine
46	chr11:10690200-10692000	Enhancers	Fetal Muscle Leg	muscle
47	chr11:10690200-10692200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:10690400-10690800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:10690400-10691000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:10690400-10691000	Enhancers	Fetal Muscle Trunk	muscle

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