Variant report

Variant	rs11042910
Chromosome Location	chr11:10674597-10674598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10584920..10587068-chr11:10674559..10677361,2	K562	blood:
2	chr11:10322610..10325546-chr11:10673380..10676333,2	K562	blood:
3	chr11:10560102..10563921-chr11:10672313..10677222,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177112	Chromatin interaction
ENSG00000254554	Chromatin interaction
ENSG00000110315	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10770129	0.81[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10770132	0.82[CEU][hapmap];0.86[CHB][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs10770133	0.81[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs10840456	0.81[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10840458	0.89[JPT][hapmap]
rs10840459	0.82[ASN][1000 genomes]
rs10840463	0.85[JPT][hapmap]
rs10840468	0.82[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs11042904	0.88[CEU][hapmap]
rs11042905	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11042911	0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12295574	0.81[ASN][1000 genomes]
rs12363422	0.88[EUR][1000 genomes]
rs12420672	0.88[EUR][1000 genomes]
rs12420675	0.88[EUR][1000 genomes]
rs12801558	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1390573	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1425150	0.85[JPT][hapmap]
rs1425151	0.85[JPT][hapmap]
rs1544863	0.90[JPT][hapmap]
rs16908157	0.81[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs16908159	0.82[CEU][hapmap];0.86[CHB][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs16908162	0.86[CHB][hapmap];0.89[JPT][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs2033049	0.96[ASN][1000 genomes]
rs34554801	0.82[ASN][1000 genomes]
rs35165550	0.88[EUR][1000 genomes]
rs4243916	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4909946	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4910164	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4910166	0.81[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes]
rs7108708	0.88[CEU][hapmap];0.84[AMR][1000 genomes]
rs7113409	0.87[ASN][1000 genomes]
rs7119452	0.88[CEU][hapmap]
rs745336	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs750540	0.88[EUR][1000 genomes]
rs7925193	0.82[CEU][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes]
rs7935285	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7938027	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7938635	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7939662	0.85[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes]
rs7939686	0.82[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs881870	0.86[CHB][hapmap]
rs903825	0.88[EUR][1000 genomes]
rs903826	0.88[EUR][1000 genomes]
rs903827	0.88[EUR][1000 genomes]
rs903828	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11042910	OR2AG1	cis	cerebellum	SCAN

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
2	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:10650400-10678600	Weak transcription	Right Ventricle	heart
4	chr11:10658800-10676600	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:10664200-10678800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:10664400-10675000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:10669600-10675600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:10669600-10676800	Weak transcription	Fetal Intestine Large	intestine
9	chr11:10670200-10674600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:10670200-10675000	Weak transcription	K562	blood
11	chr11:10670400-10675400	Genic enhancers	Fetal Stomach	stomach
12	chr11:10670800-10675000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:10670800-10676400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:10671000-10676200	Weak transcription	A549	lung
15	chr11:10671400-10676000	Enhancers	Brain Anterior Caudate	brain
16	chr11:10671400-10676200	Enhancers	Brain Hippocampus Middle	brain
17	chr11:10671400-10677000	Weak transcription	Fetal Intestine Small	intestine
18	chr11:10672000-10679200	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr11:10672200-10674600	Weak transcription	Primary B cells from cord blood	blood
20	chr11:10672400-10675000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:10672600-10674800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:10673000-10682200	Enhancers	Placenta	Placenta
23	chr11:10673200-10674600	Enhancers	NHDF-Ad	bronchial
24	chr11:10673200-10675800	Enhancers	Lung	lung
25	chr11:10673200-10676200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:10673200-10676800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr11:10673200-10677800	Enhancers	Colon Smooth Muscle	Colon
28	chr11:10673400-10674600	Enhancers	Fetal Muscle Trunk	muscle
29	chr11:10673400-10674600	Genic enhancers	NHLF	lung
30	chr11:10673400-10674800	Enhancers	Colonic Mucosa	Colon
31	chr11:10673400-10675200	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr11:10673400-10676000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:10673400-10676600	Enhancers	Spleen	Spleen
34	chr11:10673400-10679200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr11:10673400-10682800	Enhancers	Ovary	ovary
36	chr11:10673600-10675200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:10673600-10675400	Weak transcription	GM12878-XiMat	blood
38	chr11:10673600-10678400	Weak transcription	Left Ventricle	heart
39	chr11:10673600-10678400	Weak transcription	Right Atrium	heart
40	chr11:10673800-10675400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:10673800-10676200	Weak transcription	Osteobl	bone
42	chr11:10673800-10678800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:10673800-10679200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr11:10673800-10681400	Weak transcription	Pancreas	Pancrea
45	chr11:10674000-10675800	Enhancers	Esophagus	oesophagus
46	chr11:10674000-10676000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:10674000-10676200	Enhancers	Brain Substantia Nigra	brain
48	chr11:10674000-10676400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:10674000-10676600	Weak transcription	NH-A	brain
50	chr11:10674000-10677200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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