Variant report

Variant	rs1895712
Chromosome Location	chr11:10681497-10681498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10681198..10682057-chr11:10690650..10691471,2	HCT-116	colon:
2	chr11:10679153..10681988-chr11:10698825..10701306,2	K562	blood:
3	chr11:10679384..10682080-chr20:56827072..56828747,2	MCF-7	breast:
4	chr11:10674925..10678334-chr11:10679453..10682484,4	MCF-7	breast:
5	chr11:10681209..10682904-chr11:10735128..10737783,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10219376	0.82[EUR][1000 genomes]
rs10431031	0.86[EUR][1000 genomes]
rs10770128	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs10770129	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10770130	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10770132	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10770133	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10840451	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs10840454	0.93[EUR][1000 genomes]
rs10840455	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs10840456	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10840458	0.87[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10840459	0.89[ASN][1000 genomes]
rs10840460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840461	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840464	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840465	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840466	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840467	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840468	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs11042909	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11042910	0.85[JPT][hapmap]
rs11042911	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11042913	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363422	0.85[ASN][1000 genomes]
rs12420672	0.85[ASN][1000 genomes]
rs12420675	0.85[ASN][1000 genomes]
rs1390572	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390573	0.87[ASN][1000 genomes]
rs1425149	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544863	0.87[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs16908157	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs16908159	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs16908162	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1845832	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874444	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2098840	0.95[ASN][1000 genomes]
rs34554801	0.89[ASN][1000 genomes]
rs35040034	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35165550	0.85[ASN][1000 genomes]
rs4243916	0.87[ASN][1000 genomes]
rs4909946	0.87[ASN][1000 genomes]
rs4910166	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7123106	0.81[EUR][1000 genomes]
rs7127014	0.83[EUR][1000 genomes]
rs722274	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745336	0.87[ASN][1000 genomes]
rs750540	0.85[ASN][1000 genomes]
rs7925193	0.90[JPT][hapmap]
rs7933525	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935285	0.87[CEU][hapmap];0.95[EUR][1000 genomes]
rs7938027	0.87[ASN][1000 genomes]
rs7938635	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs7939662	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7939686	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs881870	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs903825	0.85[ASN][1000 genomes]
rs903826	0.85[ASN][1000 genomes]
rs903827	0.85[ASN][1000 genomes]
rs903828	0.85[ASN][1000 genomes]
rs9633862	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9633863	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10673000-10682200	Enhancers	Placenta	Placenta
2	chr11:10673400-10682800	Enhancers	Ovary	ovary
3	chr11:10674200-10681800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:10674400-10681800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr11:10674600-10689600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:10676000-10683200	Enhancers	NHDF-Ad	bronchial
7	chr11:10676400-10683400	Genic enhancers	Fetal Stomach	stomach
8	chr11:10676600-10681600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:10677000-10681800	Enhancers	HSMMtube	muscle
10	chr11:10677000-10682200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:10677000-10683400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:10677200-10682800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:10677400-10682200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr11:10677400-10683000	Enhancers	Spleen	Spleen
15	chr11:10678200-10681600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr11:10678200-10682000	Enhancers	Adipose Nuclei	Adipose
17	chr11:10678400-10682200	Enhancers	Brain Anterior Caudate	brain
18	chr11:10678400-10682200	Enhancers	Esophagus	oesophagus
19	chr11:10678400-10682200	Enhancers	Right Atrium	heart
20	chr11:10678400-10682400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:10678400-10682600	Enhancers	Left Ventricle	heart
22	chr11:10678600-10681600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:10678600-10681800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr11:10678600-10682000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:10678600-10682200	Enhancers	Right Ventricle	heart
26	chr11:10678800-10681600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:10678800-10681600	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr11:10678800-10681600	Enhancers	NHEK	skin
29	chr11:10678800-10681800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:10678800-10681800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:10678800-10682200	Enhancers	Fetal Thymus	thymus
32	chr11:10678800-10682400	Enhancers	HSMM	muscle
33	chr11:10678800-10683000	Enhancers	HUVEC	blood vessel
34	chr11:10679000-10681600	Enhancers	Fetal Lung	lung
35	chr11:10679200-10681600	Enhancers	HMEC	breast
36	chr11:10679400-10683200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:10679600-10682000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:10679600-10682200	Enhancers	Duodenum Mucosa	Duodenum
39	chr11:10679600-10682400	Enhancers	NH-A	brain
40	chr11:10679600-10683400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:10679600-10683400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:10679800-10681600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:10679800-10681800	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr11:10679800-10683200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:10679800-10683400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr11:10680000-10681600	Enhancers	GM12878-XiMat	blood
47	chr11:10680000-10682200	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr11:10680000-10682600	Enhancers	Rectal Smooth Muscle	rectum
49	chr11:10680200-10681600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr11:10680200-10681800	Flanking Active TSS	Hela-S3	cervix

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