Variant report

Variant	rs10840451
Chromosome Location	chr11:10657830-10657831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10652320..10654409-chr11:10655542..10658002,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1035693	0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10431031	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10770128	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10770129	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10770130	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10840454	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10840455	0.94[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10840456	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10840460	0.86[EUR][1000 genomes]
rs10840461	0.86[EUR][1000 genomes]
rs10840462	0.86[EUR][1000 genomes]
rs10840463	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs10840464	0.86[EUR][1000 genomes]
rs10840465	0.86[EUR][1000 genomes]
rs10840466	0.85[EUR][1000 genomes]
rs10840467	0.85[EUR][1000 genomes]
rs11042904	0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs11042905	0.86[ASN][1000 genomes]
rs11042909	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042913	0.86[EUR][1000 genomes]
rs12801558	0.86[ASN][1000 genomes]
rs1390572	0.86[EUR][1000 genomes]
rs1425149	0.86[EUR][1000 genomes]
rs1425150	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1425151	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1544862	0.86[EUR][1000 genomes]
rs1845832	0.86[EUR][1000 genomes]
rs1874444	0.85[EUR][1000 genomes]
rs1895712	0.86[EUR][1000 genomes]
rs35040034	0.85[EUR][1000 genomes]
rs3993279	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs4909943	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs4909944	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs7108708	0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7119452	0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7123106	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7127014	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs722274	0.86[EUR][1000 genomes]
rs7933525	0.85[EUR][1000 genomes]
rs7935285	0.87[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7938635	0.94[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9633862	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9633863	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:10629600-10662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:10637800-10659200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:10639800-10661600	Weak transcription	Gastric	stomach
5	chr11:10640600-10661400	Weak transcription	Left Ventricle	heart
6	chr11:10644000-10659600	Weak transcription	Osteobl	bone
7	chr11:10646000-10661600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
9	chr11:10646200-10661400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:10646400-10659400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:10646800-10667600	Weak transcription	Right Atrium	heart
13	chr11:10647200-10659000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:10647400-10659200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:10647400-10659200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:10647800-10658000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:10648000-10658400	Weak transcription	Brain Anterior Caudate	brain
18	chr11:10648000-10659200	Weak transcription	Colonic Mucosa	Colon
19	chr11:10648000-10661200	Weak transcription	Spleen	Spleen
20	chr11:10648000-10661400	Weak transcription	Adipose Nuclei	Adipose
21	chr11:10648200-10658400	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:10648200-10658600	Strong transcription	Fetal Stomach	stomach
23	chr11:10648400-10659000	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:10650400-10663400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:10650400-10678600	Weak transcription	Right Ventricle	heart
26	chr11:10651800-10670600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:10652400-10668200	Weak transcription	NHLF	lung
28	chr11:10653000-10658800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:10653200-10668200	Weak transcription	Esophagus	oesophagus
30	chr11:10653400-10658800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr11:10653600-10663600	Weak transcription	Lung	lung
32	chr11:10653600-10669000	Weak transcription	Fetal Intestine Small	intestine
33	chr11:10654400-10660800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:10654600-10658800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:10654800-10658600	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:10655200-10659800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:10655400-10659200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr11:10655400-10661400	Weak transcription	Placenta	Placenta
39	chr11:10655600-10659200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:10656600-10659200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:10657200-10659200	Strong transcription	Stomach Smooth Muscle	stomach
42	chr11:10657600-10659200	Strong transcription	Aorta	Aorta
43	chr11:10657600-10659400	Weak transcription	Ovary	ovary
44	chr11:10657800-10658000	Enhancers	Fetal Muscle Trunk	muscle

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