Variant report

Variant	rs7127014
Chromosome Location	chr11:10663052-10663053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10662421..10664986-chr11:10669210..10672158,2	K562	blood:
2	chr11:10662540..10664082-chr11:10686222..10688544,2	K562	blood:
3	chr11:10661837..10665351-chr11:10668716..10672933,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1035693	0.83[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs10431031	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10770128	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10770129	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10770130	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10840451	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840454	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10840455	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10840456	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10840460	0.83[EUR][1000 genomes]
rs10840461	0.83[EUR][1000 genomes]
rs10840462	0.83[EUR][1000 genomes]
rs10840463	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs10840464	0.83[EUR][1000 genomes]
rs10840465	0.83[EUR][1000 genomes]
rs10840466	0.82[EUR][1000 genomes]
rs10840467	0.82[EUR][1000 genomes]
rs11042904	0.90[JPT][hapmap]
rs11042905	0.91[ASN][1000 genomes]
rs11042909	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11042913	0.83[EUR][1000 genomes]
rs12801558	0.91[ASN][1000 genomes]
rs1390572	0.83[EUR][1000 genomes]
rs1425149	0.83[EUR][1000 genomes]
rs1425150	0.83[EUR][1000 genomes]
rs1425151	0.83[EUR][1000 genomes]
rs1544862	0.83[EUR][1000 genomes]
rs1559652	0.84[ASN][1000 genomes]
rs1845832	0.83[EUR][1000 genomes]
rs1874444	0.82[EUR][1000 genomes]
rs1895712	0.83[EUR][1000 genomes]
rs35040034	0.82[EUR][1000 genomes]
rs3993279	0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs4909943	0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs4909944	0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7108708	0.90[JPT][hapmap]
rs7119452	0.90[JPT][hapmap]
rs7123106	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs722274	0.83[EUR][1000 genomes]
rs7933525	0.82[EUR][1000 genomes]
rs7935285	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7938635	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9633862	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9633863	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
3	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:10646800-10667600	Weak transcription	Right Atrium	heart
5	chr11:10650400-10663400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:10650400-10678600	Weak transcription	Right Ventricle	heart
7	chr11:10651800-10670600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:10652400-10668200	Weak transcription	NHLF	lung
9	chr11:10653200-10668200	Weak transcription	Esophagus	oesophagus
10	chr11:10653600-10663600	Weak transcription	Lung	lung
11	chr11:10653600-10669000	Weak transcription	Fetal Intestine Small	intestine
12	chr11:10658400-10663800	Enhancers	Brain Anterior Caudate	brain
13	chr11:10658600-10665000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr11:10658800-10676600	Enhancers	Primary B cells from peripheral blood	blood
15	chr11:10659000-10664200	Enhancers	Fetal Muscle Leg	muscle
16	chr11:10659800-10666000	Weak transcription	Ovary	ovary
17	chr11:10660400-10663600	Weak transcription	Colonic Mucosa	Colon
18	chr11:10660400-10667600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:10660800-10664400	Enhancers	Primary hematopoietic stem cells	blood
20	chr11:10660800-10664400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:10660800-10664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:10661000-10663800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr11:10661000-10664400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr11:10661000-10665400	Enhancers	Colon Smooth Muscle	Colon
25	chr11:10661200-10663800	Enhancers	Fetal Thymus	thymus
26	chr11:10661200-10664200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:10661200-10664600	Genic enhancers	Fetal Stomach	stomach
28	chr11:10661200-10665000	Enhancers	Spleen	Spleen
29	chr11:10661200-10665800	Enhancers	Brain Hippocampus Middle	brain
30	chr11:10661200-10673600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:10661400-10663800	Genic enhancers	Aorta	Aorta
32	chr11:10661400-10664200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:10661400-10664400	Enhancers	Placenta	Placenta
34	chr11:10661400-10665800	Enhancers	Brain Substantia Nigra	brain
35	chr11:10661600-10669000	Weak transcription	NH-A	brain
36	chr11:10661800-10663400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:10661800-10667600	Weak transcription	Left Ventricle	heart
38	chr11:10662000-10663600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:10662000-10667400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:10662400-10663400	Weak transcription	Adipose Nuclei	Adipose
41	chr11:10662400-10663400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr11:10662400-10663600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:10662400-10663600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:10662400-10663800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:10662400-10664200	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr11:10662400-10664200	Enhancers	Rectal Smooth Muscle	rectum
47	chr11:10662400-10672000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr11:10662600-10663600	Weak transcription	Liver	Liver
49	chr11:10662600-10663600	Genic enhancers	Stomach Smooth Muscle	stomach
50	chr11:10662800-10663600	Enhancers	NHDF-Ad	bronchial

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