Variant report

Variant	rs10219690
Chromosome Location	chr12:87715869-87715870
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10219442	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219627	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11104398	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11104430	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11104431	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12302125	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12309007	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12315201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12317796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17014535	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17014588	0.85[ASN][1000 genomes]
rs17014615	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17577858	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17577874	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17577881	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17577888	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17577895	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17577944	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17605650	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17605679	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17605785	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4485182	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4522255	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4564411	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57967943	0.89[ASN][1000 genomes]
rs57972376	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58322011	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59038161	0.89[ASN][1000 genomes]
rs59786711	0.89[ASN][1000 genomes]
rs6538070	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6538071	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67318846	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68056248	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7297021	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7300553	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7306472	0.87[ASN][1000 genomes]
rs7308449	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7314876	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7952911	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7955357	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7958392	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7958524	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7966191	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7968168	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7968238	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7968297	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7968474	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7968621	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7971539	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7972428	0.82[ASN][1000 genomes]
rs7972666	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7972720	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7975468	0.89[ASN][1000 genomes]
rs7977794	0.95[ASN][1000 genomes]
rs7977925	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7978511	0.89[ASN][1000 genomes]
rs7980888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87712200-87716200	Weak transcription	NH-A	brain
2	chr12:87712400-87716400	Weak transcription	Osteobl	bone
3	chr12:87712400-87716600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:87712600-87718000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:87712800-87716000	Weak transcription	Aorta	Aorta
6	chr12:87714000-87718400	Enhancers	HUVEC	blood vessel
7	chr12:87714800-87716200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:87714800-87716400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:87714800-87716600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:87714800-87716800	Weak transcription	Muscle Satellite Cultured Cells	--

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