Variant report

Variant	rs12315201
Chromosome Location	chr12:87711861-87711862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10219442	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219627	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11104398	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11104430	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11104431	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12302125	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12309007	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12317796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17014535	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17014588	0.85[ASN][1000 genomes]
rs17014615	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17577858	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17577874	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17577881	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17577888	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17577895	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17577944	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17605650	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17605679	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17605785	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4485182	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4522255	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4564411	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57967943	0.89[ASN][1000 genomes]
rs57972376	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58322011	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59038161	0.89[ASN][1000 genomes]
rs59786711	0.89[ASN][1000 genomes]
rs6538070	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6538071	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67318846	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68056248	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7297021	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7300553	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7306472	0.87[ASN][1000 genomes]
rs7308449	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7314876	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7952911	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7955357	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7958392	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7958524	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7966191	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7968168	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7968238	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7968297	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7968474	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7968621	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7971539	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7972428	0.82[ASN][1000 genomes]
rs7972666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7972720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7975468	0.89[ASN][1000 genomes]
rs7977794	0.95[ASN][1000 genomes]
rs7977925	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7978511	0.89[ASN][1000 genomes]
rs7980888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv826470	chr12:87710443-87715669	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87708800-87712400	Weak transcription	Aorta	Aorta
2	chr12:87711000-87712400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr12:87711000-87712400	Enhancers	Osteobl	bone
4	chr12:87711000-87712600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr12:87711000-87712800	Enhancers	HUVEC	blood vessel
6	chr12:87711200-87712000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:87711200-87712000	Weak transcription	NH-A	brain
8	chr12:87711800-87712200	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links