Variant report

Variant	rs12302125
Chromosome Location	chr12:87719147-87719148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:87717689..87721752-chr12:87725206..87727363,3	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10219442	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10219627	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10219675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10219690	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10219753	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11104398	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11104430	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11104431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12309007	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12315201	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12317796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014535	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17014588	0.87[ASN][1000 genomes]
rs17014615	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17577858	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17577874	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17577881	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17577888	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17577895	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17577944	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17605650	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17605679	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17605785	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4485182	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4522255	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4564411	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57967943	0.90[ASN][1000 genomes]
rs57972376	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58322011	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59038161	0.90[ASN][1000 genomes]
rs59786711	0.90[ASN][1000 genomes]
rs6538070	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6538071	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67318846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68056248	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7297021	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7300553	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7306472	0.89[ASN][1000 genomes]
rs7308449	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7314876	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7952911	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7955357	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7958392	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7958524	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7966191	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7968168	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7968238	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7968297	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7968474	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7968621	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7971539	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7972428	0.84[ASN][1000 genomes]
rs7972666	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7972720	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7975468	0.90[ASN][1000 genomes]
rs7977794	0.97[ASN][1000 genomes]
rs7977925	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7978511	0.90[ASN][1000 genomes]
rs7980888	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87717400-87723000	Weak transcription	Fetal Heart	heart
2	chr12:87718400-87723000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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