Variant report

Variant	rs10222055
Chromosome Location	chr21:17494824-17494825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11911258	0.82[AMR][1000 genomes]
rs28424182	1.00[EUR][1000 genomes]
rs28477395	0.91[AMR][1000 genomes]
rs28538277	0.91[AMR][1000 genomes]
rs28636884	0.91[AMR][1000 genomes]
rs28886124	1.00[EUR][1000 genomes]
rs58713964	0.91[AMR][1000 genomes]
rs58748147	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61478315	0.91[AMR][1000 genomes]
rs61645626	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367165	1.00[EUR][1000 genomes]
rs7349006	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73893205	1.00[EUR][1000 genomes]
rs73893207	1.00[EUR][1000 genomes]
rs9808767	1.00[EUR][1000 genomes]
rs9974231	1.00[EUR][1000 genomes]
rs9976336	1.00[EUR][1000 genomes]
rs9979037	0.84[AMR][1000 genomes]
rs9984291	1.00[EUR][1000 genomes]
rs9985009	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066951	chr21:17458978-17603160	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv544381	chr21:17458978-17603160	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17490800-17495800	Weak transcription	Brain Germinal Matrix	brain
2	chr21:17490800-17496000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr21:17490800-17497000	Weak transcription	Colon Smooth Muscle	Colon
4	chr21:17491400-17496000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr21:17491400-17496200	Weak transcription	NH-A	brain
6	chr21:17492000-17496000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr21:17492200-17496000	Weak transcription	NHDF-Ad	bronchial
8	chr21:17493200-17496200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr21:17494400-17497000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr21:17494800-17497000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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