Variant report

Variant	rs9985009
Chromosome Location	chr21:17506759-17506760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10222055	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28424182	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28886124	1.00[EUR][1000 genomes]
rs58748147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61645626	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367165	1.00[EUR][1000 genomes]
rs7349006	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73893205	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73893207	1.00[EUR][1000 genomes]
rs9808767	1.00[EUR][1000 genomes]
rs9974231	1.00[EUR][1000 genomes]
rs9976336	1.00[EUR][1000 genomes]
rs9979037	0.85[AMR][1000 genomes]
rs9984291	0.96[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066951	chr21:17458978-17603160	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv544381	chr21:17458978-17603160	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3398505	chr21:17499130-17527355	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17498000-17506800	Weak transcription	Adipose Nuclei	Adipose
2	chr21:17505000-17507400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr21:17505800-17507200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr21:17506200-17507400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr21:17506600-17507000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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