Variant report

Variant	rs10223389
Chromosome Location	chr6:79559910-79559911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28623652	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443629	1.00[EUR][1000 genomes]
rs9443639	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448575	1.00[EUR][1000 genomes]
rs9448579	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9448583	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448589	1.00[EUR][1000 genomes]
rs9448592	1.00[EUR][1000 genomes]
rs9448608	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448614	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79553600-79564200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:79553800-79562400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:79554200-79564200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:79555000-79562400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:79555800-79576400	Weak transcription	Left Ventricle	heart
6	chr6:79556200-79562400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:79557000-79560400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:79557800-79571200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:79559000-79564000	Weak transcription	Ovary	ovary
10	chr6:79559200-79560400	Weak transcription	HSMM	muscle
11	chr6:79559200-79563800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:79559200-79564000	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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