Variant report

Variant	rs9443639
Chromosome Location	chr6:79735154-79735155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79733598..79735343-chr6:79785922..79787786,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10223389	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28623652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899945	1.00[EUR][1000 genomes]
rs6933121	1.00[EUR][1000 genomes]
rs9443629	1.00[EUR][1000 genomes]
rs9448579	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9448583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448585	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448589	1.00[EUR][1000 genomes]
rs9448592	1.00[EUR][1000 genomes]
rs9448608	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448614	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs9448620	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448642	1.00[EUR][1000 genomes]
rs9448644	1.00[EUR][1000 genomes]
rs9448645	1.00[EUR][1000 genomes]
rs9448649	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687000-79736000	Strong transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:79687000-79736200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:79687200-79735400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:79687200-79741600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:79687600-79775000	Strong transcription	Dnd41	blood
6	chr6:79687800-79736000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:79688400-79742800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:79688400-79744400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:79689200-79738800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:79704000-79737400	Weak transcription	Right Ventricle	heart
11	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:79705000-79738600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:79706600-79740000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:79706600-79747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:79707400-79737400	Weak transcription	Spleen	Spleen
16	chr6:79707400-79740000	Weak transcription	Small Intestine	intestine
17	chr6:79707400-79755800	Weak transcription	Pancreas	Pancrea
18	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
20	chr6:79707800-79745200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:79708200-79741800	Weak transcription	A549	lung
22	chr6:79708800-79769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:79709000-79737400	Weak transcription	Ovary	ovary
24	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
25	chr6:79712200-79741600	Weak transcription	HSMMtube	muscle
26	chr6:79712400-79735400	Weak transcription	Brain Substantia Nigra	brain
27	chr6:79713600-79747000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:79714600-79735800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:79714600-79747000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:79715800-79735400	Weak transcription	Brain Angular Gyrus	brain
31	chr6:79717200-79765600	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:79718000-79739600	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:79721000-79739000	Strong transcription	Primary B cells from peripheral blood	blood
34	chr6:79721600-79735600	Weak transcription	Fetal Heart	heart
35	chr6:79722200-79736000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:79722400-79735400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:79722400-79735800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:79722600-79739000	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr6:79724600-79765200	Weak transcription	Stomach Mucosa	stomach
40	chr6:79725000-79739800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr6:79725200-79747000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:79725400-79738200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:79725800-79738600	Weak transcription	NHLF	lung
44	chr6:79726000-79751400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:79726000-79765800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr6:79726400-79737200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:79726600-79735600	Weak transcription	Brain Anterior Caudate	brain
48	chr6:79726600-79747000	Weak transcription	Fetal Brain Female	brain
49	chr6:79726600-79751800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:79726600-79766200	Weak transcription	Placenta Amnion	Placenta Amnion

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