Variant report

Variant	rs9448644
Chromosome Location	chr6:79852663-79852664
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28623652	1.00[EUR][1000 genomes]
rs6899945	1.00[EUR][1000 genomes]
rs6933121	1.00[EUR][1000 genomes]
rs9443629	1.00[EUR][1000 genomes]
rs9443639	1.00[EUR][1000 genomes]
rs9448608	1.00[EUR][1000 genomes]
rs9448620	1.00[EUR][1000 genomes]
rs9448642	1.00[EUR][1000 genomes]
rs9448645	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs9448649	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79846200-79856400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:79852600-79853600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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