Variant report

Variant	rs9448620
Chromosome Location	chr6:79773246-79773247
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:79766914..79769296-chr6:79770475..79773266,2	K562	blood:
2	chr6:79764915..79767501-chr6:79771426..79773646,2	MCF-7	breast:
3	chr6:79772283..79777542-chr6:79785063..79789352,10	MCF-7	breast:
4	chr6:79760341..79764703-chr6:79769573..79773396,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146247	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28623652	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899945	1.00[EUR][1000 genomes]
rs6933121	1.00[EUR][1000 genomes]
rs9443629	1.00[EUR][1000 genomes]
rs9443639	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448589	1.00[EUR][1000 genomes]
rs9448592	1.00[EUR][1000 genomes]
rs9448608	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448642	1.00[EUR][1000 genomes]
rs9448644	1.00[EUR][1000 genomes]
rs9448645	1.00[EUR][1000 genomes]
rs9448649	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687600-79775000	Strong transcription	Dnd41	blood
2	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
5	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
6	chr6:79730000-79786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:79730600-79776600	Weak transcription	Aorta	Aorta
8	chr6:79732200-79774600	Weak transcription	Gastric	stomach
9	chr6:79736000-79773600	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:79739000-79780000	Weak transcription	NHLF	lung
11	chr6:79742000-79785400	Weak transcription	HSMMtube	muscle
12	chr6:79742600-79773800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:79748200-79774000	Weak transcription	Fetal Heart	heart
14	chr6:79748200-79774400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:79751600-79774600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:79755000-79785400	Weak transcription	Colonic Mucosa	Colon
17	chr6:79756600-79775000	Weak transcription	Pancreas	Pancrea
18	chr6:79759200-79774600	Weak transcription	Fetal Stomach	stomach
19	chr6:79759600-79780200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:79760600-79785400	Weak transcription	Right Ventricle	heart
21	chr6:79760600-79786800	Weak transcription	Spleen	Spleen
22	chr6:79762200-79774200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:79763200-79776600	Weak transcription	Fetal Intestine Small	intestine
24	chr6:79763600-79774600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:79764000-79782200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:79765600-79773600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:79766200-79774200	Weak transcription	Brain Angular Gyrus	brain
28	chr6:79766400-79782000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:79766600-79774000	Weak transcription	Ovary	ovary
30	chr6:79766600-79775000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:79766600-79780600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:79767200-79774000	Weak transcription	Small Intestine	intestine
33	chr6:79768600-79773800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:79768600-79774000	Weak transcription	Brain Substantia Nigra	brain
35	chr6:79768600-79780600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:79768600-79786400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:79768800-79775800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:79769000-79774200	Weak transcription	Colon Smooth Muscle	Colon
39	chr6:79769800-79785400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:79770400-79773600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:79770400-79773800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:79770400-79774000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr6:79770400-79774400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr6:79770400-79774600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr6:79770400-79774600	Weak transcription	Fetal Lung	lung
46	chr6:79770400-79774600	Weak transcription	Fetal Muscle Leg	muscle
47	chr6:79770400-79774600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr6:79770400-79775000	Weak transcription	Adipose Nuclei	Adipose
49	chr6:79770400-79776600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:79770400-79776600	Weak transcription	Left Ventricle	heart

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