Variant report

Variant	rs9443629
Chromosome Location	chr6:79653760-79653761
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79643799..79646665-chr6:79651824..79654665,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10223389	1.00[EUR][1000 genomes]
rs28623652	1.00[EUR][1000 genomes]
rs6899945	1.00[EUR][1000 genomes]
rs6933121	1.00[EUR][1000 genomes]
rs9443639	1.00[EUR][1000 genomes]
rs9448574	1.00[EUR][1000 genomes]
rs9448575	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9448579	1.00[EUR][1000 genomes]
rs9448583	1.00[EUR][1000 genomes]
rs9448585	1.00[EUR][1000 genomes]
rs9448589	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9448592	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9448608	1.00[EUR][1000 genomes]
rs9448620	1.00[EUR][1000 genomes]
rs9448642	1.00[EUR][1000 genomes]
rs9448644	1.00[EUR][1000 genomes]
rs9448645	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79640400-79655000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:79642600-79658200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:79644000-79658600	Strong transcription	Dnd41	blood
4	chr6:79644600-79654000	Weak transcription	Brain Substantia Nigra	brain
5	chr6:79644800-79655400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:79645000-79657400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:79645600-79658200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:79645600-79658600	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:79646000-79658000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:79646000-79658400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:79646200-79658200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr6:79646200-79658200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:79646200-79659000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:79646400-79658200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:79646400-79658400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr6:79646600-79658000	Strong transcription	Liver	Liver
17	chr6:79647200-79658200	Strong transcription	Placenta	Placenta
18	chr6:79647600-79654800	Weak transcription	Brain Germinal Matrix	brain
19	chr6:79648000-79657400	Strong transcription	HUVEC	blood vessel
20	chr6:79648000-79658200	Weak transcription	Esophagus	oesophagus
21	chr6:79648000-79658800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:79648000-79660600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:79648000-79681200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:79648200-79655000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:79648200-79655000	Weak transcription	Thymus	Thymus
26	chr6:79648200-79658200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:79648800-79655400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:79648800-79655400	Weak transcription	Lung	lung
29	chr6:79648800-79657600	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr6:79648800-79658200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:79648800-79658200	Strong transcription	Duodenum Mucosa	Duodenum
32	chr6:79648800-79658200	Weak transcription	Fetal Stomach	stomach
33	chr6:79648800-79658400	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr6:79648800-79658400	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:79648800-79658600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:79648800-79658600	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:79648800-79658600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:79648800-79658600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:79648800-79659000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:79648800-79714400	Weak transcription	Gastric	stomach
41	chr6:79649000-79654200	Weak transcription	Ovary	ovary
42	chr6:79649000-79657200	Strong transcription	GM12878-XiMat	blood
43	chr6:79649000-79658000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:79649000-79658200	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr6:79649000-79658200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:79649000-79658200	Weak transcription	Pancreas	Pancrea
47	chr6:79649000-79658200	Weak transcription	Spleen	Spleen
48	chr6:79649000-79658400	Strong transcription	Primary B cells from cord blood	blood
49	chr6:79649000-79658400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:79649000-79666200	Strong transcription	Rectal Mucosa Donor 29	rectum

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