Variant report

Variant	rs10223418
Chromosome Location	chr6:37145523-37145524
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37144419..37146803-chr6:37161414..37163193,2	K562	blood:
2	chr6:37142590..37145563-chr6:37170274..37176000,5	K562	blood:
3	chr6:37145223..37146087-chr6:37175760..37176311,2	K562	blood:
4	chr6:36996009..36998535-chr6:37144117..37146528,2	K562	blood:
5	chr6:37143067..37148225-chr6:37171800..37179920,10	K562	blood:
6	chr6:37144838..37147064-chr6:37153595..37157045,3	K562	blood:
7	chr6:36993861..36996746-chr6:37142194..37145787,3	K562	blood:
8	chr6:36986026..36986641-chr6:37144661..37145631,2	K562	blood:

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11962492	0.93[EUR][1000 genomes]
rs2070892	0.93[EUR][1000 genomes]
rs262911	0.92[ASN][1000 genomes]
rs262914	0.92[ASN][1000 genomes]
rs262915	0.92[ASN][1000 genomes]
rs262931	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3957240	0.89[CHB][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs56744613	0.87[EUR][1000 genomes]
rs60735182	0.93[EUR][1000 genomes]
rs9394418	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470514	0.84[AMR][1000 genomes]
rs9470519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37141000-37165000	Weak transcription	Right Atrium	heart
2	chr6:37142600-37159600	Weak transcription	Fetal Heart	heart
3	chr6:37143000-37147800	Weak transcription	Colonic Mucosa	Colon
4	chr6:37143200-37146000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:37143200-37146800	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:37143200-37147000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:37143200-37148000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:37143200-37150600	Weak transcription	Gastric	stomach
9	chr6:37143200-37153000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:37143400-37145800	Enhancers	Primary T cells from cord blood	blood
11	chr6:37143400-37146000	Weak transcription	Left Ventricle	heart
12	chr6:37143400-37146200	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:37143400-37150400	Weak transcription	Lung	lung
14	chr6:37143400-37150600	Weak transcription	Thymus	Thymus
15	chr6:37143400-37150600	Weak transcription	HepG2	liver
16	chr6:37143400-37155200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:37143400-37159600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:37143600-37145600	Weak transcription	HUVEC	blood vessel
19	chr6:37143600-37145600	Weak transcription	NHDF-Ad	bronchial
20	chr6:37143600-37145800	Enhancers	GM12878-XiMat	blood
21	chr6:37143600-37146200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:37143600-37146400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:37143600-37150600	Weak transcription	Liver	Liver
24	chr6:37143600-37150600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:37143600-37150800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:37143600-37151200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:37143600-37151800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:37143800-37145600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:37143800-37145600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:37143800-37145600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:37143800-37145600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:37143800-37145600	Weak transcription	Fetal Lung	lung
33	chr6:37143800-37145600	Weak transcription	A549	lung
34	chr6:37143800-37145600	Weak transcription	Osteobl	bone
35	chr6:37143800-37145800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:37143800-37146000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr6:37143800-37146400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:37143800-37147800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:37143800-37148600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:37143800-37150800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:37143800-37151200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:37144000-37146000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:37144000-37146000	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr6:37144000-37146200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:37144000-37146200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr6:37144000-37146400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:37144000-37146400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:37144000-37151200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:37144200-37145800	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr6:37144200-37145800	Weak transcription	Fetal Stomach	stomach

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