Variant report

Variant	rs262915
Chromosome Location	chr6:37151538-37151539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr6:37150940-37151686	K562	blood:	n/a	n/a
2	CEBPB	chr6:37150598-37151875	K562	blood:	n/a	chr6:37150963-37150980
3	TEAD4	chr6:37150542-37151645	K562	blood:	n/a	n/a
4	EP300	chr6:37150616-37151838	K562	blood:	n/a	n/a
5	TEAD4	chr6:37150472-37151650	K562	blood:	n/a	n/a
6	ATF1	chr6:37150668-37151699	K562	blood:	n/a	n/a
7	GATA1	chr6:37149824-37151626	K562	blood:	n/a	chr6:37151227-37151237
8	JUN	chr6:37150689-37151683	K562	blood:	n/a	n/a
9	POLR2A	chr6:37150606-37151688	K562	blood:	n/a	n/a
10	POLR2A	chr6:37150422-37152038	K562	blood:	n/a	n/a
11	CEBPB	chr6:37150558-37151949	K562	blood:	n/a	chr6:37150963-37150980
12	JUN	chr6:37150493-37151820	K562	blood:	n/a	n/a
13	JUND	chr6:37150651-37151862	K562	blood:	n/a	n/a
14	CEBPB	chr6:37151498-37151792	K562	blood:	n/a	n/a
15	NR2F2	chr6:37149895-37151994	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000252687	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10155782	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10223418	0.92[ASN][1000 genomes]
rs262911	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs262914	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262931	0.92[ASN][1000 genomes]
rs3957240	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9394418	0.90[ASN][1000 genomes]
rs9470519	0.94[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37141000-37165000	Weak transcription	Right Atrium	heart
2	chr6:37142600-37159600	Weak transcription	Fetal Heart	heart
3	chr6:37143200-37153000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:37143400-37155200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:37143400-37159600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:37143600-37151800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:37144600-37155000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:37145200-37153400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:37145600-37162800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:37145800-37159600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:37147400-37152000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:37147400-37153400	Enhancers	Primary T cells fromperipheralblood	blood
13	chr6:37147600-37152400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:37147600-37155200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:37147800-37160800	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:37148000-37152400	Enhancers	Fetal Thymus	thymus
17	chr6:37148600-37152200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:37149400-37152000	Enhancers	Primary T cells from cord blood	blood
19	chr6:37150000-37152400	Enhancers	Primary B cells from cord blood	blood
20	chr6:37150000-37158800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:37150200-37152200	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:37150600-37151800	Enhancers	Thymus	Thymus
23	chr6:37150600-37152200	Enhancers	Spleen	Spleen
24	chr6:37151000-37151600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:37151000-37152600	Enhancers	Dnd41	blood
26	chr6:37151000-37153000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr6:37151000-37153400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:37151000-37155000	Weak transcription	Esophagus	oesophagus
29	chr6:37151000-37155200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:37151000-37155200	Weak transcription	Adipose Nuclei	Adipose
31	chr6:37151000-37158200	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr6:37151000-37158400	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr6:37151000-37158400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:37151200-37153600	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr6:37151200-37154800	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr6:37151400-37151600	Enhancers	K562	blood
37	chr6:37151400-37152200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr6:37151400-37154800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr6:37151400-37155200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:37151400-37157200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:37151400-37158400	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links