Variant report

Variant	rs10223505
Chromosome Location	chr6:25627088-25627089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25619323..25622321-chr6:25626739..25629730,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10046149	1.00[AMR][1000 genomes]
rs28425539	1.00[AMR][1000 genomes]
rs9461193	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9461194	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9461208	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9461213	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9467531	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9467533	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9467540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9467550	1.00[YRI][hapmap]
rs9467553	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9467554	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9467557	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9467559	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9467563	1.00[AMR][1000 genomes]
rs9467564	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9467567	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9467597	1.00[AMR][1000 genomes]
rs9467605	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9467611	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883488	chr6:25592489-25731691	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25585200-25629400	Weak transcription	Pancreas	Pancrea
2	chr6:25594200-25629200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:25594400-25627200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:25594600-25627200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:25594600-25629600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:25613200-25631000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:25619800-25628600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:25622800-25627600	Weak transcription	Aorta	Aorta
9	chr6:25622800-25634800	Weak transcription	Fetal Intestine Small	intestine
10	chr6:25623000-25627200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:25623400-25627200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:25625200-25630600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:25626400-25628600	Weak transcription	HepG2	liver
14	chr6:25626800-25627400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:25626800-25627800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:25626800-25628000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:25626800-25628200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:25626800-25629400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:25627000-25627800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:25627000-25628800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:25627000-25628800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr6:25627000-25629000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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