Variant report
| Variant | rs9467559 |
|---|---|
| Chromosome Location | chr6:25676897-25676898 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:25671845..25674006-chr6:25676606..25678161,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10046149 | 1.00[AMR][1000 genomes] |
| rs10223505 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28425539 | 1.00[AMR][1000 genomes] |
| rs9461193 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9461194 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9461208 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9461213 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9467531 | 1.00[AMR][1000 genomes] |
| rs9467533 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9467540 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9467550 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs9467553 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9467554 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9467557 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9467563 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9467564 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9467567 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9467597 | 1.00[AMR][1000 genomes] |
| rs9467605 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9467611 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883488 | chr6:25592489-25731691 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029920 | chr6:25638507-26585842 | Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1215 gene(s) | inside rSNPs | diseases |
| 3 | nsv538162 | chr6:25638507-26585842 | Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1215 gene(s) | inside rSNPs | diseases |
| 4 | nsv427747 | chr6:25641380-25908218 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:25667200-25677800 | Enhancers | Pancreatic Islets | Pancreatic Islet |
| 2 | chr6:25676800-25679600 | Weak transcription | Pancreas | Pancrea |
