Variant report
| Variant | rs9467564 |
|---|---|
| Chromosome Location | chr6:25682765-25682766 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:15)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:15 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAX | chr6:25682620-25682849 | K562 | blood: | n/a | chr6:25682761-25682770 chr6:25682760-25682771 |
| 2 | SPI1 | chr6:25682481-25682993 | HL-60 | blood: | n/a | chr6:25682705-25682718 |
| 3 | ATF1 | chr6:25682581-25682935 | K562 | blood: | n/a | n/a |
| 4 | MAFK | chr6:25682700-25682828 | HepG2 | liver: | n/a | chr6:25682776-25682787 chr6:25682772-25682788 chr6:25682775-25682789 chr6:25682777-25682788 |
| 5 | SPI1 | chr6:25682567-25682831 | K562 | blood: | n/a | chr6:25682705-25682718 |
| 6 | SPI1 | chr6:25682550-25682825 | HL-60 | blood: | n/a | chr6:25682705-25682718 |
| 7 | BHLHE40 | chr6:25682566-25682939 | K562 | blood: | n/a | n/a |
| 8 | TRIM28 | chr6:25682628-25682825 | K562 | blood: | n/a | n/a |
| 9 | MAX | chr6:25682641-25682928 | K562 | blood: | n/a | chr6:25682761-25682770 chr6:25682760-25682771 |
| 10 | MAFF | chr6:25682619-25682944 | K562 | blood: | n/a | n/a |
| 11 | USF1 | chr6:25682542-25682938 | K562 | blood: | n/a | n/a |
| 12 | MAFK | chr6:25682687-25682908 | HepG2 | liver: | n/a | chr6:25682776-25682787 chr6:25682772-25682788 chr6:25682775-25682789 chr6:25682777-25682788 |
| 13 | MAFK | chr6:25682591-25682917 | K562 | blood: | n/a | chr6:25682776-25682787 chr6:25682772-25682788 chr6:25682775-25682789 chr6:25682777-25682788 |
| 14 | MAX | chr6:25682581-25682956 | NB4 | blood: | n/a | chr6:25682761-25682770 chr6:25682760-25682771 |
| 15 | SPI1 | chr6:25682553-25682831 | K562 | blood: | n/a | chr6:25682705-25682718 |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:25682123..25685911-chr6:25693985..25696713,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PRELID1P2 | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10046149 | 1.00[AMR][1000 genomes] |
| rs10223505 | 1.00[AMR][1000 genomes] |
| rs28425539 | 1.00[AMR][1000 genomes] |
| rs9461193 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9461194 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9461208 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9461213 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9467531 | 1.00[AMR][1000 genomes] |
| rs9467533 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9467540 | 1.00[AMR][1000 genomes] |
| rs9467550 | 1.00[YRI][hapmap] |
| rs9467553 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9467554 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9467557 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9467559 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9467563 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9467567 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9467597 | 1.00[AMR][1000 genomes] |
| rs9467605 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9467611 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883488 | chr6:25592489-25731691 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029920 | chr6:25638507-26585842 | Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1215 gene(s) | inside rSNPs | diseases |
| 3 | nsv538162 | chr6:25638507-26585842 | Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1215 gene(s) | inside rSNPs | diseases |
| 4 | nsv427747 | chr6:25641380-25908218 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:25680400-25683000 | Genic enhancers | Pancreatic Islets | Pancreatic Islet |
| 2 | chr6:25682600-25682800 | Enhancers | Pancreas | Pancrea |
| 3 | chr6:25682600-25683000 | Enhancers | K562 | blood |
