Variant report

Variant	rs10223567
Chromosome Location	chr6:37179240-37179241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36984139..36992310-chr6:37174438..37180666,13	K562	blood:
2	chr6:36986227..36987023-chr6:37179191..37179864,2	MCF-7	breast:
3	chr6:37176912..37179882-chr6:37181319..37183621,3	K562	blood:
4	chr6:37177179..37179979-chr6:37232016..37233735,2	K562	blood:
5	chr6:36985027..36989561-chr6:37176409..37180028,4	K562	blood:
6	chr6:36989705..36991355-chr6:37177906..37180017,2	K562	blood:
7	chr6:37001172..37003656-chr6:37177575..37179330,2	K562	blood:
8	chr6:37139248..37140979-chr6:37178268..37180778,2	K562	blood:
9	chr6:37149356..37151039-chr6:37177346..37179658,2	K562	blood:
10	chr6:37143067..37148225-chr6:37171800..37179920,10	K562	blood:
11	chr6:37136338..37142901-chr6:37174353..37180910,16	K562	blood:
12	chr6:36995372..37000472-chr6:37174362..37180086,7	K562	blood:
13	chr6:36989570..36992539-chr6:37178142..37179821,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12208176	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212132	1.00[ASN][1000 genomes]
rs55894055	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7739790	0.81[EUR][1000 genomes]
rs9470541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470543	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527191	chr6:37173793-37180523	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37176000-37182600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:37176200-37179800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:37176200-37180000	Enhancers	K562	blood
4	chr6:37176200-37189800	Weak transcription	Thymus	Thymus
5	chr6:37178200-37184200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:37178400-37180000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:37178600-37180800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:37178800-37180000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:37179000-37185600	Weak transcription	Dnd41	blood
10	chr6:37179200-37179600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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